LGRPv2

Gene search

Sequence information

Select	Gene	Cds	Cds_length	GC_content	Pep	Pep_length
	Gso11g3416	ATGTTGGCGATGGAATGGAGATCAACGTGGCTTTCGATGGTGGCATGTCCCTTGAAGGGAAGAAGACCCAACTTGGGGTGTGTAGAAACATGCTTAAAAGGGGCAATCATGAGTGACGAAGGAGAAAGGACTTGTCCTCTCTGTGCTGAAGAGATGGATTTGACAGATCAGCAGTTGAAACCATGCAAATGTGGTTATCAGATATGTGTCTGGTGTTGGCATCACATACTGGAAATGGCTGAGAAGGATGACACAGAGGGACGATGCCCTGCATGTCGTTCTCCATATGATAAGGAAAAGATTGTTGGGATGGCTGCAAACTGTGAGAGATTGGTGGCTGAAGTTCATATGGAAAAAAAGGTGAAGAACCAGAAAGCAAAGTCAAAATCTTCTGAAGCACGGAAGCAGCTCAGTAGTGTGCGAGTAATTCAGCGGAATCTGGTTTACATAGTGGGATTGCCTCTCAATCTGGCAGACGAAGATTTCCTCCAGCAGCGAGAATATTTTGGTCAGTATGGAAAGGTCTTAAAAGTGTCAATGTCTCGGACTACAGCTGGTGTTGTTCAGCAGTTTCCAAACAATACATGTAGTGTATATATTACTTACTCGAAGGAAGAAGAAGCAATTCGATGCATTCTAAATGTGCATGGATTCGTTTTGGAGGGTAGACCTTTAAGGGCTTGTTTTGGAACCACTAAATATTGTCATGCATGGCTCAGAAACATGCCTTGCAGCAATCCAGATTGTCTATATCTTCATGAGATTGGCTCTCAAGAGGATAGTTTCACAAAAGATGAAATAATTTCAGCATACACTAGAAGTCATGTTCAACAAATTACTGGTGCTGCAAACAATATACAACGACAAGCAGGGAATGTATTGCCTCCTCCATTGGATGATTGCATGGATAATTCATCAGGAAAACCAATTGTGAAAAATTCATCAAGTACCTCTGTTAGCATTGTAAGAAGTTCACCTCCTAATGGAACTTCTGGGAGACCTATAGCTCTTTCTGCGGTTGCATGGGGTACACGGGCTACAAATTGTCAGCCAGCTGCTGATGGTTTATTATGTCCAAATGGACTGTCCAGGCCTAAACCTGATACAATCAGCAGCAGCCTACCCTTTTCCTCTGCTGTTGCATGCACAATTCAGGCTTCATTAAATAGTGATGTGACAAAGAGGCCACTGTTGAGTGATGGGAGTCGTAGTATGACACCTCAAGTAAAAAATGAATTATTGAAACCTGTTGAACAAAATAGAAGCATGGATATCCTGGATAGTGCTGGTGAAAGAACTTTGGTTTCTGATGTTTCTCTTTCAGCTGTTAAATTGAACAACCAGTTGTCTTCTCTACCATTAGCCGGAGATAGTGGTAGAGGCAGCTTTACTGCAACTAACACAACTAGTTCAATTGACATCACTCGACAACCATTAAGCTTTGGTCCTGAGGAAGCAGTTATATCTACCTGTGAAGAGATTGAGAATTTGTCCTGCGAGTTTTCTTCTGTTTACATTGATAGAAATGCCCAAAATAAACACTACAGCCTATCCATACCTAGCAGCTCACCTGATAATGTGTTGGTTAAATCTATGCAATCTCAAGAATTGCAGTATAATACTGACAAATTGAAAGATTTAATGATTAAAAATGCAGACAGTAAAGCTGCTGCATTATATAATGAGGTTTGTAATTTAAAGGAACAGTGTGATTTGTCATTGGATTCTCAATCTCAAGTAGTATCAGCTAATACTGAAGTGGAAGATGATGTAACAACTTTTGATAATCAGAGACTTAAGGATCCAGAAGTTATTGGTTCTTATTTGCCCGAGTCAGCCAGTTTCCTTCATGTCTCAAATCATTCTAGTCCTCTTCTTCTGCAGTGTGGTGACCCATGTAATGTTGTAAATGCTGGTTTTTTAGATGCCAATGATAAAGTTGAGGATAACTCACTATTACATGCACATAACATATGCAATGGATATTCTGATGAGATCAGTACCAGTTCTTATTGGTTCCGCCATGATGCAAGCAATGAGCACCACATTGGAAGATTAGTTAGTGATGCAGTTAATATTGGAAGTGATGCTGTTATGGACAAGGGTGAGAGTAGTATAATTTCAAATATATTATCGATGGAGTTTGATGCCTGGGATGACTCGCTGGCATCACATGAGAGTTTGACCAAGTTGTTGGGTGACAACACTGACAGCCAGAATGGTCCGTTAAAAAAATCTAGTTCTAGGAAAGTTCAAAGTAACAATCAATCAAGATTTTCTTTTGCATGGCAGGAGGAATCCAAATTCCAAGCCAATGTACCTCCATCTTCTGGTGCTACCCAGCCATTTCCAAAGAATGGCTCACTCATCCAGGATTTTGTGGAAAGAGACTTTTCTTTGAACAAGCTGGGTTTTGCAAATGGCTTCCCCTCCAATAACCTCAAGGAATCTGGAAATCTTGGCAGTGGTCATTTCATTGCTTCAAACAATAAGCTTTCAGCTGTTTCAAGAGCACAAATTTCAGCACCGCCAGGATTCTCTGTTCCGAACAGGGCACCACCTCCTGGTTTCTCTTCAGTTGAGAGAATGGGGCAGGCTTTTGACTCCCTCTCTGGGAATTCATTGCTGGACCCTTCTTTCTTACTGAGAAATTCTTATCAAACACCCTCAAATGGAAATATTGGTGGTCCAGGTGACGTTGAATTTATGGATCCTGCTATTTTGGCAGTTAGTAAAGGCCCTGAACAGTTTAACTACTTTGAAAATGAGGCCAGAGTTCAATTATTGATGCAAAGATCTCCCTCACCACAGCAAGACCTTCGATTTTCTGAAATTGGGAATTCCTTTTCTCAGTTTGGTGATTCTTATGGCATTTCTTCAAGGTTAAATCAATCACAAGTTAGTAATCTGGCTTCATTTCCTCAGTTATCTCTGCAGCAGTCTAGAAATGCAGTCTTGTCAAATGGCCAATTGGATGGGCGGAATGGAAATGGTCTGGGTGTGGCAGAGCTTTTGAGAAATGAAAGACTTGGATTTAACAAGTTTTATAGAGGATATGATGATTCAAAATATCGGATGCCTAATTCTATGGATGTGTTCAACAGGACATTTGGGATTTGA	3120	0.4077	MLAMEWRSTWLSMVACPLKGRRPNLGCVETCLKGAIMSDEGERTCPLCAEEMDLTDQQLKPCKCGYQICVWCWHHILEMAEKDDTEGRCPACRSPYDKEKIVGMAANCERLVAEVHMEKKVKNQKAKSKSSEARKQLSSVRVIQRNLVYIVGLPLNLADEDFLQQREYFGQYGKVLKVSMSRTTAGVVQQFPNNTCSVYITYSKEEEAIRCILNVHGFVLEGRPLRACFGTTKYCHAWLRNMPCSNPDCLYLHEIGSQEDSFTKDEIISAYTRSHVQQITGAANNIQRQAGNVLPPPLDDCMDNSSGKPIVKNSSSTSVSIVRSSPPNGTSGRPIALSAVAWGTRATNCQPAADGLLCPNGLSRPKPDTISSSLPFSSAVACTIQASLNSDVTKRPLLSDGSRSMTPQVKNELLKPVEQNRSMDILDSAGERTLVSDVSLSAVKLNNQLSSLPLAGDSGRGSFTATNTTSSIDITRQPLSFGPEEAVISTCEEIENLSCEFSSVYIDRNAQNKHYSLSIPSSSPDNVLVKSMQSQELQYNTDKLKDLMIKNADSKAAALYNEVCNLKEQCDLSLDSQSQVVSANTEVEDDVTTFDNQRLKDPEVIGSYLPESASFLHVSNHSSPLLLQCGDPCNVVNAGFLDANDKVEDNSLLHAHNICNGYSDEISTSSYWFRHDASNEHHIGRLVSDAVNIGSDAVMDKGESSIISNILSMEFDAWDDSLASHESLTKLLGDNTDSQNGPLKKSSSRKVQSNNQSRFSFAWQEESKFQANVPPSSGATQPFPKNGSLIQDFVERDFSLNKLGFANGFPSNNLKESGNLGSGHFIASNNKLSAVSRAQISAPPGFSVPNRAPPPGFSSVERMGQAFDSLSGNSLLDPSFLLRNSYQTPSNGNIGGPGDVEFMDPAILAVSKGPEQFNYFENEARVQLLMQRSPSPQQDLRFSEIGNSFSQFGDSYGISSRLNQSQVSNLASFPQLSLQQSRNAVLSNGQLDGRNGNGLGVAELLRNERLGFNKFYRGYDDSKYRMPNSMDVFNRTFGI*	1040

Annotation information

Select	Seq ID	Length	Analysis	Description	Start	End	IPR	GO
	Gso11g3416	1039	Gene3D	-	147	228	IPR012677	-
	Gso11g3416	1039	CDD	mRING-HC-C4C4_CNOT4	45	94	IPR039515	-
	Gso11g3416	1039	CDD	RRM_CNOT4	141	240	IPR034261	-
	Gso11g3416	1039	Pfam	RING/Ubox like zinc-binding domain	45	97	-	-
	Gso11g3416	1039	ProSiteProfiles	Zinc finger RING-type profile.	45	93	IPR001841	-
	Gso11g3416	1039	MobiDBLite	consensus disorder prediction	732	756	-	-
	Gso11g3416	1039	PANTHER	RNA-BINDING (RRM/RBD/RNP MOTIF) FAMILY PROTEIN	30	1039	-	-
	Gso11g3416	1039	ProSiteProfiles	Eukaryotic RNA Recognition Motif (RRM) profile.	146	232	IPR000504	GO:0003723
	Gso11g3416	1039	Pfam	RNA recognition motif. (a.k.a. RRM, RBD, or RNP domain)	148	226	IPR000504	GO:0003723
	Gso11g3416	1039	MobiDBLite	consensus disorder prediction	312	331	-	-
	Gso11g3416	1039	PANTHER	CCR4-NOT TRANSCRIPTION COMPLEX RELATED	30	1039	IPR039780	GO:0004842\|GO:0030014
	Gso11g3416	1039	Gene3D	Zinc/RING finger domain, C3HC4 (zinc finger)	35	113	IPR013083	-
	Gso11g3416	1039	SUPERFAMILY	RING/U-box	35	102	-	-
	Gso11g3416	1039	SUPERFAMILY	RNA-binding domain, RBD	140	226	IPR035979	GO:0003676
	Gso11g3416	1039	SMART	rrm2_1	147	228	IPR003954	GO:0003676

Duplication type information

Select	Gene	Chromosome	Start	End	Duplicated_type
	Gso11g3416	Gso-Chr11	50067817	50079379	Dispersed/Wgd

Pathway information

Select	Query	KO	Definition	Second KO	KEGG Genes ID	GHOSTX Score
	Gso11g3416	K10643		-	gmx:100805811	1997.63

Event-related genes

Select	Gene_1	Chr_1	Start_1	End_1	Gene_2	Chr_2	Start_2	End_2	Event_name
	Gso15g0385	15	3532943	3543806	Gso11g3416	11	50067817	50079379	GST
	Gso11g3416	11	50067817	50079379	Gso12g0601	12	5445300	5453029	PCT
	Gso11g3416	11	50067817	50079379	Gso11g1242	11	11391791	11399442	PCT
	Gso12g0601	12	5445300	5453029	Gso11g3416	11	50067817	50079379	PCT