Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Gso11g1242 ATGGATGCTTTATTGTATATCTATACGATTCTCTCTGTTCTGATTGATGATTTAGTTGATCTGTGGTGTCTCAGGCCAATCATGAGTGACGAAGGAGAAAGAACTTGTCCTCTCTGTGCTGAAGAGATGGATTTGACAGATCAGCAATTGAAGCCTTGCAAATGCGGTTATGAGATCTGTGTCTGGTGCTGGCACCACATAATGGACATGGCTGAGAAGGATGACACTGAGGGGCGATGCCCCGCATGTCGATCTCCTTATGATAAGGAAAAGATTGTTGGGACAGCTGCAAACTGTGACAGATTGGTGAATGGAGTTAATATTGAGAAAAGGATGAAGACTCAGAAAACGAAGTCTAAATCAACTGATGGGCGTAAGCAGCTCAGCAGTGTGCGAGTGATTCAGAGGAACCTTGTTTACATAGTTGGGTTGCCTCTCAATCTTGCAGATGAAGATCTTCTTCAGCGAAGAGAGTATTTTAGTCAGTATGGGAAGGTCTTAAAAGTGTCAATGTCTCGAACAGCAGCTGGTGTCATTCAACAGTTTCCGAATGATACCTGCAGTGTATATATAACTTATTCAAAGGAAGAGGAAGCAATTCGTTGTATTCAAAATGTACATGGTTTTGTTTTGGAGGGTAGACCTTTAAGGGCTTGTTTTGGAACCACAAAATATTGTCATGCATGGCTCCGGAATGTGCCTTGCAGCAATCCGGATTGTCTGTATTTGCATGAGATTGGCTCTCAAGAAGATAGTTTTACCAAGGATGAAATAATTTCAGCATACACTAGTCGAGTTCAACAAATCACTGGTGCCACAAACAATATGCAACGGCGGTCAGGGAATGTATTACCTCCTCCACTGGATGACAATATGAATAGTTCATCTGCAAAGCCTATTGTTAAAAATTCTTCAAGTAACTCTGTTAGCACTGTAAGAGGTTCACCTCCAAATGGAATATATGGGAAAAATATGGCCCTTCCTACTAGTGCTGCATGGGGTACTCAGGTCACAAATTGTCAGCCCCCTGCTGGAGGTCTATCATATCCAAATGGGCCATCCAAGCCAAAACCTGATACAGGCAGCAGCACACTGGTATTTTCTGCAGCTGTTACAGGCTCAATTCAGGCTTCTGATGTTACAAAGAGGCCACCATCGAGTAATGGGAGTCATAGTATGACACCTAGAGTGAAAAGTGAATTGTTGAAACCTGTCAAACAATATAACAATAGTGTGGACAGTCTGGTTAGTGAAGGAGAAAAAACTTTAGCTTCTGATGTTTCTCCTATGCTTGTGAATTTGAACAGGCAGTTGTCTCCTCTACCGTTGTCCCGAGATAGTGATGGAAATTGTACTACAGCAAACACAATAAATTCTACTAACATGATTGGACAGTCTTGTAACTTTGGTCTTGAGGAAGCAATGACTGCTACCAATGAAGAGATTCAGAATTTGTCCAACGAGTTGTCCTCAATTAACATTGATAGAAATGCCGAACATTGCGGTATAACCAAACCTAATAATAGCCCACCTACTGATCATGCATTGATTAAATCTCCTCAAATTCAAGGATCACAGTATAATGTTGACAGATTTAGAGATGAAATAACTACAGATGTGGCTGGTAAAGCTACCTCAGATTTTTTGGTTTGTAATTCTACTGAACAGTGTGATTGGAAATTGGATTCTCAATCTCTAGTAGTATCAGATACTGCTGAAATTGATGATGATGTGACATCTTTTGATAATCAAAGACTCAAGGATCCAGAAGTTGTTTGTCGTTCTTATTTTCCAAAGTCAACCAGATTCCTGCAAGCATCAAACCATTCTAGCCCTTGTCTTCTGCAGCATGGTGAACCTTGTACTGCCATAAATGCAGGTTCTGTATCTGCTGATGATAGAGTTCGAGATGAATCTATGTTACATGCATCCAATATATTATGTAATGGTCACCCTGAAAAATTGGTCAGCAGCAGCTCCTATGGTCTGCTTCATGATGAAAGAAATGGGCATATCATTCAAAGATTAGTTGGTGAAGCAGTTAATTCTGGACATGATATTGCTAGGGATAAAGGTGAAAGTAGTATAATTTCTAATATATTGTCCATGGACTTTGATACCTGGGATGACTCACTAACATCACCTCATAATTTAGCGAAGTTGTTGGGTGACAATACTGATAACCAGCCTGGTCCTTTAAACAAATCTAGTTCTTGGAAAGGTCACAGTAACAATCAATCAAGGTTTTCTTTTGCAAGGCAGGAGGAATCCAAAATCCAAATGTTTGATCCACATGCATCTTATGGTGTCAGCCATCAACGGCCAAACCGTACAGTCTTCCTGAATTGTGCAGAAAGAGACTTGTATATGGATAAGTTGGGCATTGCAAATGGATTTTCTACCAGTAACTTTGAGGAAGCTGAAAATATGGTCAGTGGTCATTCCATTGCATCTTCTAATAAGTTTTCTGCCATCTCAAGAGCACAAGTTTCAGCCCCGCCAGGATTTTCCATTCCAAGCAGGTTGCCACCACCTGGTTTTTCTTCCCATGAGAGAGTGGAGCAGGCTTTTGATTCCATTTCTGGGAATTCTTTGCTTGACCATTCTTCCCTCTTGAGAAATTCATATCAGACACCTTCAGCTGGAAACCTTGGTAGTGCAGGGGACATTGAATTTATGGACCCTGCTATTATGGCAGTTGGCAAAGGGAGACTTCAAGGTGCACTGAACAGTCCGGCACTGGACATTCGATCTAATTTCATGCCACAATTAAATTACTTTGAAAATGATGCTAGACTACAATTATTGATGCAAAGATCTCTTGTACCACAGCAAAACCTTAGATTTTCTGAAATTGGGAATACTTTTTCTCAACTTGGTGATTCCTATGCTGTTTCTTCGAGGTTAGACCAATCACAAGTCAGTAATCTAGGCCCATTCCAACAGCTGTCTCTGCAGCAGTCTACAAATGCCGTCTTGTCTAATGGGCAATGGGATGGGTGGAATGAGGTGCAGAGTGGAAATGGTTTGGGTGTGGCTGAGCTTTTGAGAAATGAAAGACTTGGATTCAATAAATTTTACTCAGGATATGATGATTCAAAATTTCGGATGCCAAATTCTGGGGATCTTTACAACAGAACATTTGGGATGTGA 3153 0.4082 MDALLYIYTILSVLIDDLVDLWCLRPIMSDEGERTCPLCAEEMDLTDQQLKPCKCGYEICVWCWHHIMDMAEKDDTEGRCPACRSPYDKEKIVGTAANCDRLVNGVNIEKRMKTQKTKSKSTDGRKQLSSVRVIQRNLVYIVGLPLNLADEDLLQRREYFSQYGKVLKVSMSRTAAGVIQQFPNDTCSVYITYSKEEEAIRCIQNVHGFVLEGRPLRACFGTTKYCHAWLRNVPCSNPDCLYLHEIGSQEDSFTKDEIISAYTSRVQQITGATNNMQRRSGNVLPPPLDDNMNSSSAKPIVKNSSSNSVSTVRGSPPNGIYGKNMALPTSAAWGTQVTNCQPPAGGLSYPNGPSKPKPDTGSSTLVFSAAVTGSIQASDVTKRPPSSNGSHSMTPRVKSELLKPVKQYNNSVDSLVSEGEKTLASDVSPMLVNLNRQLSPLPLSRDSDGNCTTANTINSTNMIGQSCNFGLEEAMTATNEEIQNLSNELSSINIDRNAEHCGITKPNNSPPTDHALIKSPQIQGSQYNVDRFRDEITTDVAGKATSDFLVCNSTEQCDWKLDSQSLVVSDTAEIDDDVTSFDNQRLKDPEVVCRSYFPKSTRFLQASNHSSPCLLQHGEPCTAINAGSVSADDRVRDESMLHASNILCNGHPEKLVSSSSYGLLHDERNGHIIQRLVGEAVNSGHDIARDKGESSIISNILSMDFDTWDDSLTSPHNLAKLLGDNTDNQPGPLNKSSSWKGHSNNQSRFSFARQEESKIQMFDPHASYGVSHQRPNRTVFLNCAERDLYMDKLGIANGFSTSNFEEAENMVSGHSIASSNKFSAISRAQVSAPPGFSIPSRLPPPGFSSHERVEQAFDSISGNSLLDHSSLLRNSYQTPSAGNLGSAGDIEFMDPAIMAVGKGRLQGALNSPALDIRSNFMPQLNYFENDARLQLLMQRSLVPQQNLRFSEIGNTFSQLGDSYAVSSRLDQSQVSNLGPFQQLSLQQSTNAVLSNGQWDGWNEVQSGNGLGVAELLRNERLGFNKFYSGYDDSKFRMPNSGDLYNRTFGM* 1051
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Gso11g1242 1050 Gene3D Zinc/RING finger domain, C3HC4 (zinc finger) 26 104 IPR013083 -
Gso11g1242 1050 PANTHER CCR4-NOT TRANSCRIPTION COMPLEX RELATED 21 1050 IPR039780 GO:0004842|GO:0030014
Gso11g1242 1050 ProSiteProfiles Eukaryotic RNA Recognition Motif (RRM) profile. 137 223 IPR000504 GO:0003723
Gso11g1242 1050 ProSiteProfiles Zinc finger RING-type profile. 36 84 IPR001841 -
Gso11g1242 1050 MobiDBLite consensus disorder prediction 336 395 - -
Gso11g1242 1050 Pfam RNA recognition motif. (a.k.a. RRM, RBD, or RNP domain) 139 217 IPR000504 GO:0003723
Gso11g1242 1050 Coils Coil 468 495 - -
Gso11g1242 1050 CDD mRING-HC-C4C4_CNOT4 36 85 IPR039515 -
Gso11g1242 1050 SMART rrm1_1 138 219 IPR000504 GO:0003723
Gso11g1242 1050 PANTHER RNA-BINDING (RRM/RBD/RNP MOTIF) FAMILY PROTEIN 21 1050 - -
Gso11g1242 1050 MobiDBLite consensus disorder prediction 719 746 - -
Gso11g1242 1050 SMART rrm2_1 138 219 IPR003954 GO:0003676
Gso11g1242 1050 Gene3D - 138 219 IPR012677 -
Gso11g1242 1050 SUPERFAMILY RING/U-box 27 93 - -
Gso11g1242 1050 SUPERFAMILY RNA-binding domain, RBD 131 217 IPR035979 GO:0003676
Gso11g1242 1050 MobiDBLite consensus disorder prediction 355 395 - -
Gso11g1242 1050 CDD RRM_CNOT4 132 231 IPR034261 -
Gso11g1242 1050 Pfam RING/Ubox like zinc-binding domain 36 88 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Gso11g1242 Gso-Chr11 11391791 11399442 Dispersed/Wgd
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Gso11g1242 K10643 - gmx:100813427 2068.89
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Gso11g1242 11 11391791 11399442 Gso11g1242 11 11391791 11399442 ECH
Gso12g0601 12 5445300 5453029 Gso11g1242 11 11391791 11399442 GST
Gso15g0385 15 3532943 3543806 Gso11g1242 11 11391791 11399442 PCT
Gso11g3416 11 50067817 50079379 Gso11g1242 11 11391791 11399442 PCT