Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Gso15g0269 ATGCCAACTATTTTGCATAGGATTTTCCTTCTTTACAACCTCGTACACTCATTCCTCCTCTGTCTGGTCCCCAAGAAGGTGCGTCCCTTCCTCCCCCCTTCTTGGTTCCAAACCAAAACCATCACTGCACCTTCTTCTTCTTCTTCTTCTTCTTCCAGTGCCCGCATCATCAAGAGAACAACAATGGACCCCAACGAGCTGAAGCGCGTGTTCCAGATGTTCGACCGCAACGGCGACGGAAGAATAACGAAGAAGGAGCTGAACGACTCGCTGGAGAATCTTGGCATCTTCATTCCTGACAAGGAGCTCGGCCAAATGATCGAGAGGATTGACGTCAACGGCGATGGCTGCGTCGACATCGACGAGTTCGGGGAGCTCTACCAGACCATCATGGACGAGCGCGACGAGGAGGAGGACATGAGGGAGGCCTTCAACGTCTTCGACCAGAACGCCGACGGCTTCATCACCGTCGACGAGTTGAGGACCGTCCTGTCCTCCCTCGGCTTGAAGCAGGGCAGAACCGTCCAAGACTGCAAGAACATGATATCCAAGGTTGATGTTGATGGAGACGGCATGGTCGATTTCAAGGAGTTCAAGCAAATGATGAAAGGGGGTGGCTTCAGTGCTCTCACTTAA 636 0.5267 MPTILHRIFLLYNLVHSFLLCLVPKKVRPFLPPSWFQTKTITAPSSSSSSSSSARIIKRTTMDPNELKRVFQMFDRNGDGRITKKELNDSLENLGIFIPDKELGQMIERIDVNGDGCVDIDEFGELYQTIMDERDEEEDMREAFNVFDQNADGFITVDELRTVLSSLGLKQGRTVQDCKNMISKVDVDGDGMVDFKEFKQMMKGGGFSALT* 212
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Gso15g0269 211 PANTHER CALMODULIN-LIKE PROTEIN 4 6 209 - -
Gso15g0269 211 ProSitePatterns EF-hand calcium-binding domain. 186 198 IPR018247 -
Gso15g0269 211 PRINTS Parvalbumin signature 126 144 - -
Gso15g0269 211 PRINTS Parvalbumin signature 148 164 - -
Gso15g0269 211 PRINTS Parvalbumin signature 185 198 - -
Gso15g0269 211 ProSitePatterns EF-hand calcium-binding domain. 148 160 IPR018247 -
Gso15g0269 211 Pfam EF-hand domain pair 66 128 IPR002048 GO:0005509
Gso15g0269 211 Gene3D - 138 204 - -
Gso15g0269 211 ProSiteProfiles EF-hand calcium-binding domain profile. 135 170 IPR002048 GO:0005509
Gso15g0269 211 ProSiteProfiles EF-hand calcium-binding domain profile. 62 97 IPR002048 GO:0005509
Gso15g0269 211 CDD EFh 143 203 IPR002048 GO:0005509
Gso15g0269 211 Pfam EF-hand domain pair 152 203 IPR002048 GO:0005509
Gso15g0269 211 ProSiteProfiles EF-hand calcium-binding domain profile. 98 133 IPR002048 GO:0005509
Gso15g0269 211 PANTHER EF-HAND CALCIUM-BINDING DOMAIN CONTAINING PROTEIN 6 209 - -
Gso15g0269 211 CDD EFh 66 123 IPR002048 GO:0005509
Gso15g0269 211 ProSiteProfiles EF-hand calcium-binding domain profile. 173 208 IPR002048 GO:0005509
Gso15g0269 211 ProSitePatterns EF-hand calcium-binding domain. 75 87 IPR018247 -
Gso15g0269 211 SMART efh_1 102 130 IPR002048 GO:0005509
Gso15g0269 211 SMART efh_1 177 205 IPR002048 GO:0005509
Gso15g0269 211 SMART efh_1 66 94 IPR002048 GO:0005509
Gso15g0269 211 SMART efh_1 139 167 IPR002048 GO:0005509
Gso15g0269 211 Gene3D - 33 137 - -
Gso15g0269 211 ProSitePatterns EF-hand calcium-binding domain. 111 123 IPR018247 -
Gso15g0269 211 SUPERFAMILY EF-hand 65 205 IPR011992 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Gso15g0269 Gso-Chr15 2446798 2448271 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Gso15g0269 7 209 EF-hand Containing Proteins AT2G43290 63.507 2.03e-91 265
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Gso15g0269 K13448 - gmx:100527487 404.06
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Gso15g0269 15 2446798 2448271 Gso11g3539 11 51190521 51191494 GST
Gso15g0269 15 2446798 2448271 Gso12g0434 12 3774174 3775042 PCT
Gso15g0269 15 2446798 2448271 Gso11g1085 11 9695883 9696771 PCT