Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Gso11g3539 ATGATGAGGCAAGAAGTTGTATTTTGGGATCCCCGTGGCTTCAAGAAGAGAATCTCAATGGAGGCCCAGGAGCTGAAGCGCGTGTTCCAGATGTTCGACCGCAACGGCGACGGGAGAATAACGAAGAAGGAGCTGAACGACTCGCTGGAGAACCTGGGCATCTTCATCTCTGACAAGGACCTGAGCCAAATGATCCAGAGGATCGACGTCAACGGCGACGGTTGCGTGGACATGGACGAGTTTGGGGAGCTGTATCAGACCATAATGGACGAGCGCGACAATGAGGAGGACATGAGGGAGGCCTTCAACGTCTTCGACCAGAACGCCGACGGCTTCATCACCGTCGACGAGTTGAGGACCGTCTTGTCCTCCCTCGGCTTGAAGCAAGGAAGAACCGTCCAAGACTGCAAGGCCATGATCTCCAAGGTCGATGTTGATGGAGATGGCATGGTCGATTACAAGGAGTTCAAGCAAATGATGAAAGGGGGTGGATTCACTGCTCTCACTTAA 510 0.5333 MMRQEVVFWDPRGFKKRISMEAQELKRVFQMFDRNGDGRITKKELNDSLENLGIFISDKDLSQMIQRIDVNGDGCVDMDEFGELYQTIMDERDNEEDMREAFNVFDQNADGFITVDELRTVLSSLGLKQGRTVQDCKAMISKVDVDGDGMVDYKEFKQMMKGGGFTALT* 170
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Gso11g3539 169 ProSiteProfiles EF-hand calcium-binding domain profile. 131 166 IPR002048 GO:0005509
Gso11g3539 169 Gene3D - 10 86 - -
Gso11g3539 169 ProSitePatterns EF-hand calcium-binding domain. 69 81 IPR018247 -
Gso11g3539 169 SMART efh_1 24 52 IPR002048 GO:0005509
Gso11g3539 169 SMART efh_1 60 88 IPR002048 GO:0005509
Gso11g3539 169 SMART efh_1 135 163 IPR002048 GO:0005509
Gso11g3539 169 SMART efh_1 97 125 IPR002048 GO:0005509
Gso11g3539 169 Pfam EF-hand domain pair 23 86 IPR002048 GO:0005509
Gso11g3539 169 Pfam EF-hand domain pair 95 161 IPR002048 GO:0005509
Gso11g3539 169 PANTHER EF HAND CALCIUM-BINDING FAMILY PROTEIN 20 168 - -
Gso11g3539 169 SUPERFAMILY EF-hand 21 162 IPR011992 -
Gso11g3539 169 ProSitePatterns EF-hand calcium-binding domain. 106 118 IPR018247 -
Gso11g3539 169 ProSiteProfiles EF-hand calcium-binding domain profile. 20 55 IPR002048 GO:0005509
Gso11g3539 169 PRINTS Parvalbumin signature 84 102 - -
Gso11g3539 169 PRINTS Parvalbumin signature 106 122 - -
Gso11g3539 169 PRINTS Parvalbumin signature 143 156 - -
Gso11g3539 169 ProSiteProfiles EF-hand calcium-binding domain profile. 93 128 IPR002048 GO:0005509
Gso11g3539 169 ProSiteProfiles EF-hand calcium-binding domain profile. 56 91 IPR002048 GO:0005509
Gso11g3539 169 CDD EFh 97 161 IPR002048 GO:0005509
Gso11g3539 169 PANTHER EF-HAND CALCIUM-BINDING DOMAIN CONTAINING PROTEIN 20 168 - -
Gso11g3539 169 ProSitePatterns EF-hand calcium-binding domain. 144 156 IPR018247 -
Gso11g3539 169 ProSitePatterns EF-hand calcium-binding domain. 33 45 IPR018247 -
Gso11g3539 169 Gene3D - 87 163 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Gso11g3539 Gso-Chr11 51190521 51191494 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Gso11g3539 20 168 EF-hand Containing Proteins AT3G07490 80.537 3.11e-76 223
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Gso11g3539 K13448 - gmx:100813656 332.028
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Gso15g0269 15 2446798 2448271 Gso11g3539 11 51190521 51191494 GST
Gso11g3539 11 51190521 51191494 Gso12g0434 12 3774174 3775042 PCT
Gso11g3539 11 51190521 51191494 Gso11g1085 11 9695883 9696771 PCT