Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Gso12g0434 ATGGATCCTATGGAGCTTAAGCGTGTTTTCCAAATGTTCGACCGAAACGGTGACGGGAGAATCTCATTGAAGGAGTTGAGTGATTCATTGGAGAATCTGGGCATCTTGATCCCGGACAAGGACCTTGCTCAGATGATCGAGAGGATTGACCTGAACGGAGACGGTTGCGTGGACATGGATGAGTTTGGAGACTTATACGAGTCCATCATGGAGGAGCGTGACGAGGAGGAGGACATGAGGGAGGCCTTCAACGTCTTCGATCAAAACCGCGACGGTTTCATAACCGTCGAGGAACTGCGAAGGGTGTTGGCCTCCCTCGGACTCAAACAAGGGGGGACCCTTGACGAGTGCAAGAAGATGATCACCAAAGTCGATGTTGATGGGGATGGCATGGTTAATTACAAAGAGTTCAGGCAAATGATGAAGGGGGGAGGCTTTACTGCTCTTAGTTAG 453 0.5033 MDPMELKRVFQMFDRNGDGRISLKELSDSLENLGILIPDKDLAQMIERIDLNGDGCVDMDEFGDLYESIMEERDEEEDMREAFNVFDQNRDGFITVEELRRVLASLGLKQGGTLDECKKMITKVDVDGDGMVNYKEFRQMMKGGGFTALS* 151
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Gso12g0434 150 ProSitePatterns EF-hand calcium-binding domain. 125 137 IPR018247 -
Gso12g0434 150 ProSitePatterns EF-hand calcium-binding domain. 14 26 IPR018247 -
Gso12g0434 150 PANTHER EF-HAND CALCIUM-BINDING DOMAIN CONTAINING PROTEIN 1 150 - -
Gso12g0434 150 SMART efh_1 41 69 IPR002048 GO:0005509
Gso12g0434 150 SMART efh_1 78 106 IPR002048 GO:0005509
Gso12g0434 150 SMART efh_1 5 33 IPR002048 GO:0005509
Gso12g0434 150 SMART efh_1 116 144 IPR002048 GO:0005509
Gso12g0434 150 ProSiteProfiles EF-hand calcium-binding domain profile. 37 72 IPR002048 GO:0005509
Gso12g0434 150 Pfam EF-hand domain pair 76 142 IPR002048 GO:0005509
Gso12g0434 150 Pfam EF-hand domain pair 5 66 IPR002048 GO:0005509
Gso12g0434 150 ProSitePatterns EF-hand calcium-binding domain. 50 62 IPR018247 -
Gso12g0434 150 PANTHER EF HAND CALCIUM-BINDING FAMILY PROTEIN 1 150 - -
Gso12g0434 150 ProSiteProfiles EF-hand calcium-binding domain profile. 112 147 IPR002048 GO:0005509
Gso12g0434 150 SUPERFAMILY EF-hand 5 143 IPR011992 -
Gso12g0434 150 ProSiteProfiles EF-hand calcium-binding domain profile. 74 109 IPR002048 GO:0005509
Gso12g0434 150 ProSitePatterns EF-hand calcium-binding domain. 87 99 IPR018247 -
Gso12g0434 150 Gene3D - 67 144 - -
Gso12g0434 150 Gene3D - 2 66 - -
Gso12g0434 150 CDD EFh 82 142 IPR002048 GO:0005509
Gso12g0434 150 PRINTS Parvalbumin signature 65 83 - -
Gso12g0434 150 PRINTS Parvalbumin signature 87 103 - -
Gso12g0434 150 PRINTS Parvalbumin signature 124 137 - -
Gso12g0434 150 ProSiteProfiles EF-hand calcium-binding domain profile. 1 36 IPR002048 GO:0005509
Gso12g0434 150 CDD EFh 5 62 IPR002048 GO:0005509
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Gso12g0434 Gso-Chr12 3774174 3775042 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Gso12g0434 1 149 EF-hand Containing Proteins AT1G05990 77.333 1.22e-76 223
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Gso12g0434 K13448 - gmx:100796922 286.96
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Gso12g0434 12 3774174 3775042 Gso11g1085 11 9695883 9696771 GST
Gso15g0269 15 2446798 2448271 Gso12g0434 12 3774174 3775042 PCT
Gso11g3539 11 51190521 51191494 Gso12g0434 12 3774174 3775042 PCT