Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Gso11g1085 ATGGACCCTGCAGAGCTGAAGCGCGTTTTCCAATTGTTCGACCGCAACGGTGACGGGAGAATCTCATTGAAGGAGCTGAGCGATTCGTTGGAGAATCTAGGCATCTTGATCCCGGACAAGGACCTTGCTCAGATGATCGAGAGAATCGACATGAACGGAGACGGTTGCATAGACGTGGACGAGTTTGGGGACTTGTATGAGTCCATCATGGAGGAGCCTGATGAGGAGGAGGACATGAGGGAGGCCTTTAACGTCTTTGACCAGAACCGCGACGGTTTCATCACCGTCGAGGAACCAGGGACAGTGCTGGCCTCCCTCGGCCTCAAACAAGGGAGGACCCTTGACGAGTGCAAGAAGATGATCATGAAAGTCGACGTTGATGGAGATGGCATGGTTAATTACAAGGAGTTCAGGCAAATGATGAAGGGAGGAGGCTTCACTGTCCTTAGTTAG 453 0.521 MDPAELKRVFQLFDRNGDGRISLKELSDSLENLGILIPDKDLAQMIERIDMNGDGCIDVDEFGDLYESIMEEPDEEEDMREAFNVFDQNRDGFITVEEPGTVLASLGLKQGRTLDECKKMIMKVDVDGDGMVNYKEFRQMMKGGGFTVLS* 151
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Gso11g1085 150 SMART efh_1 78 106 IPR002048 GO:0005509
Gso11g1085 150 SMART efh_1 116 144 IPR002048 GO:0005509
Gso11g1085 150 SMART efh_1 5 33 IPR002048 GO:0005509
Gso11g1085 150 SMART efh_1 41 69 IPR002048 GO:0005509
Gso11g1085 150 ProSiteProfiles EF-hand calcium-binding domain profile. 1 36 IPR002048 GO:0005509
Gso11g1085 150 PANTHER EF-HAND CALCIUM-BINDING DOMAIN CONTAINING PROTEIN 1 149 - -
Gso11g1085 150 ProSitePatterns EF-hand calcium-binding domain. 125 137 IPR018247 -
Gso11g1085 150 SUPERFAMILY EF-hand 4 143 IPR011992 -
Gso11g1085 150 ProSitePatterns EF-hand calcium-binding domain. 14 26 IPR018247 -
Gso11g1085 150 ProSiteProfiles EF-hand calcium-binding domain profile. 37 72 IPR002048 GO:0005509
Gso11g1085 150 ProSiteProfiles EF-hand calcium-binding domain profile. 74 109 IPR002048 GO:0005509
Gso11g1085 150 ProSitePatterns EF-hand calcium-binding domain. 50 62 IPR018247 -
Gso11g1085 150 ProSiteProfiles EF-hand calcium-binding domain profile. 112 147 IPR002048 GO:0005509
Gso11g1085 150 PANTHER EF HAND CALCIUM-BINDING FAMILY PROTEIN 1 149 - -
Gso11g1085 150 CDD EFh 82 142 IPR002048 GO:0005509
Gso11g1085 150 Gene3D - 69 144 - -
Gso11g1085 150 CDD EFh 5 62 IPR002048 GO:0005509
Gso11g1085 150 Gene3D - 2 68 - -
Gso11g1085 150 Pfam EF-hand domain pair 76 142 IPR002048 GO:0005509
Gso11g1085 150 Pfam EF-hand domain pair 5 66 IPR002048 GO:0005509
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Gso11g1085 Gso-Chr11 9695883 9696771 Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Gso11g1085 1 147 EF-hand Containing Proteins AT2G43290 72.368 3.82e-76 224
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Gso11g1085 K13448 - gmx:100781506 286.96
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Gso11g1085 11 9695883 9696771 Gso11g1085 11 9695883 9696771 ECH
Gso12g0434 12 3774174 3775042 Gso11g1085 11 9695883 9696771 GST
Gso15g0269 15 2446798 2448271 Gso11g1085 11 9695883 9696771 PCT
Gso11g3539 11 51190521 51191494 Gso11g1085 11 9695883 9696771 PCT