Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Gso15g0245 ATGAAGCGATTATTGATTAGTACAAAAAAAAAAAAAAAAAGAGAATTTTGGGGAGCACTCATCAACCATGGTGATGTTGTTTGCACACACAGATTCAGTAGTCACTCACTAGTTCTCGGAGAAAACCAAGTGTCAGTAATAACTAACAAGCAAAACAGAAAAGAATACGGATTCGATTCGGAGAGATCAACCATGAAGAACGACCACAACAACAACAACAACAACAGCGCCGAGCATAGCAAAGACACTACCGTTGGAATCCTAGATTCCCGATTCAACCAGACCCTCAGAAATGTTCAAGGGTTACTCAAGGGTCGTAACATTCCTGGTAAAATATTATTGAGCCAGAGGGTTGAATCTCCCGATTACACAAGCTTATCCTCACCGACTTATATAAGGAGCTCCTCATACAGTGAAACTGGCACAAGTGACCAGACATCTGAGACGGAGGAAGTTCACAGTACAAGTAAACCATTTGGTATTCCCAATGACAATAAGTTAAAAATATCAGCATCCAATGTAGAGAGCTCATCCGAAGAAGTCCGGAAATCTTCCATGGGTGCAAGAGCTACAGATTCTGCAAGAGTTATGAAGTTCACTAAGGTGCTTTCAGAGACAATGGTTAAATTAGAGAAATTGCGTGAATTTTCTTGGAGTGGTGTTCCAGATTATATGCGTCCTACAGTGTGGAGACTTCTCTTGGGATATGCACCACCTAATTCAGATAGAAGGGAGGGAGTTTTGAAAAGGAAGCGCCTTGAGTATCTTGACTGTGTTTCTCAGTATTATGATATTCCTGATACAGAACGCTCGGATGATGAGATCAATATGCTTCGCCAGATTGCTGTTGATTGTCCAAGAACTGTACCTGAAGTTTCATTCTTTCAACAACAGCAAGTTCAGAAATCATTGGAGCGTATTCTGTACACATGGGCCATTCGGCATCCTGCAAGTGGATATGTTCAGGGGATAAATGATCTTGTTACGCCATTTTTAGTTGTTTTCCTATCAGAATACTTGGAAGGGGGCATAGATAATTGGTCAATGTCTGATTTATCTTCAGATGAAATCTCTAATATAGAGGCCGACTGCTATTGGTGCTTGTCAAAGTTGCTTGATGGTATGCAAGACCATTATACGTTTGCCCAACCAGGAATTCAAAGGCTTGTTTTTAAGTTGAAGGAATTGGTCAGGAGGATTGATGATCCTGCTTCAAACCATATGGAGGAGCAAGGATTGGAATTTCTTCAATTTGCTTTCCGCTGGTTCAACTGTCTTCTAATCCGCGAGATACCCTTCCATCTTGTCACACGTCTTTGGGACACATATCTAGCTGAAGGAGATGCCTTACCAGATTTCCTTGTGTATATATCTGCCAGTTTTCTTCTAACGTGGTCTGACAAGCTCCAGAAGCTTGATTTCCAAGAGATGGTAATGTTCCTTCAGCACCTTCCAACTAAGAACTGGACTCAACAGGAGCTCGAGATGGTACTTTCTCGTGCATTTATGTGGCACAGTATGTTCAACAACTCTCCGAGTCATTTAGCTAACTGA 1554 0.4144 MKRLLISTKKKKKREFWGALINHGDVVCTHRFSSHSLVLGENQVSVITNKQNRKEYGFDSERSTMKNDHNNNNNNSAEHSKDTTVGILDSRFNQTLRNVQGLLKGRNIPGKILLSQRVESPDYTSLSSPTYIRSSSYSETGTSDQTSETEEVHSTSKPFGIPNDNKLKISASNVESSSEEVRKSSMGARATDSARVMKFTKVLSETMVKLEKLREFSWSGVPDYMRPTVWRLLLGYAPPNSDRREGVLKRKRLEYLDCVSQYYDIPDTERSDDEINMLRQIAVDCPRTVPEVSFFQQQQVQKSLERILYTWAIRHPASGYVQGINDLVTPFLVVFLSEYLEGGIDNWSMSDLSSDEISNIEADCYWCLSKLLDGMQDHYTFAQPGIQRLVFKLKELVRRIDDPASNHMEEQGLEFLQFAFRWFNCLLIREIPFHLVTRLWDTYLAEGDALPDFLVYISASFLLTWSDKLQKLDFQEMVMFLQHLPTKNWTQQELEMVLSRAFMWHSMFNNSPSHLAN* 518
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Gso15g0245 517 ProSiteProfiles TBC/rab GAP domain profile. 220 447 IPR000195 -
Gso15g0245 517 MobiDBLite consensus disorder prediction 122 166 - -
Gso15g0245 517 MobiDBLite consensus disorder prediction 52 83 - -
Gso15g0245 517 Gene3D - 197 248 - -
Gso15g0245 517 SUPERFAMILY Ypt/Rab-GAP domain of gyp1p 197 407 IPR035969 -
Gso15g0245 517 MobiDBLite consensus disorder prediction 67 83 - -
Gso15g0245 517 Gene3D putative rabgap domain of human tbc1 domain family member 14 like domains 256 381 - -
Gso15g0245 517 SUPERFAMILY Ypt/Rab-GAP domain of gyp1p 383 505 IPR035969 -
Gso15g0245 517 PANTHER RAB-GTPASE-TBC DOMAIN-CONTAINING PROTEIN-RELATED 67 514 - -
Gso15g0245 517 PANTHER TBC1 DOMAIN FAMILY MEMBER GTPASE-ACTIVATING PROTEIN 67 514 - -
Gso15g0245 517 Gene3D - 382 517 - -
Gso15g0245 517 SMART tbc_4 217 473 IPR000195 -
Gso15g0245 517 Pfam Rab-GTPase-TBC domain 224 469 IPR000195 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Gso15g0245 Gso-Chr15 2223215 2229315 Dispersed/Wgd
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Gso15g0245 K20360 - gmx:100785695 870.922
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Gso15g0245 15 2223215 2229315 Gso11g3559 11 51359373 51364648 GST
Gso15g0245 15 2223215 2229315 Gso12g0412 12 3593006 3598852 PCT
Gso15g0245 15 2223215 2229315 Gso11g1065 11 9509705 9515784 PCT
Gso12g0412 12 3593006 3598852 Gso15g0245 15 2223215 2229315 PCT
Gso11g1065 11 9509705 9515784 Gso15g0245 15 2223215 2229315 PCT