Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Gso11g3559 ATGAAGAACGACCACAACAACAACGCCGAACACAACAAAGACACTACCGTTGGAATCCTAGATTCCCGATTCAACCAGACCCTCAGAAATGTTCAAGGGTTACTCAAGGGTCGTAACATTCCTGGTAAAATATTATTAAGCCAGAGGGTTGAATCTCCAGATTACACAAGCTTATCCTCACCAACTTATATAAGGAGCTCCTCATACAGTGAAACTGGCACAAGTGACCAGACATCTGAGACAGTAGAGGAGGAAGTTCACAGTACAAGTAAACCATTTGGTATTCCCAATGAGAATAAGTTGAAAATATCAGCATCCAATGTAGAGAGCTCATCTGAAGAACTCCGGAAATCTTCCATGGGTGCAAGAGCTACAGATTCTGCAAGAGTTATGAAGTTCACTAAGGTGCTTTCAGAGACAATGGTTAAATTAGAGAAATTGCGTGAATTTTCTTGGAGGGGTGTTCCAGATTATATGCGTCCTACAGTGTGGAGACTTCTCTTGGGATATGCACCACCTAATTCAGATAGAAGGGAGGGAGTTTTGAAAAGGAAGCGCCTTGAGTATCTTGACTGTGTTTCTCAGTATTATGATATTCCTGATACAGAACGCTCAGATGATGAGATCAATATGCTTCGCCAGATTGCTGTTGATTGTCCAAGAACTGTGCCTGAAGTTTCATTCTTTCAACAACAGCAAGTTCAGAAATCATTGGAGCGTATTCTGTACACATGGGCAATTCGACATCCTGCAAGTGGATATGTTCAGGGGATAAATGATCTTGTTACGCCATTTTTAGTTGTTTTCCTATCAGAATACTTGGAAGGGGGCATAGATAATTGGTCAATGTCTGATTTATCTTCAGATGAAATCTCTAATGTAGAGGCTGACTGCTATTGGTGCTTGTCAAAGTTGCTTGACAGTATGCAAGACCATTATACATTTGCTCAACCAGGAATTCAAAGGCTTGTTTTTAAGTTGAAGGAATTGGTCAGGAGGATTGACGATCCTGTTTCAAACCATATGGAGGAGCAAGGATTGGAATTTCTTCAATTTGCTTTCCGCTGGTTCAACTGTCTTCTAATCCGCGAGATACCCTTCCATCTTGTCACTCGTCTTTGGGACACATATCTAGCTGAAGGAGATGCCTTACCAGACTTCCTTGTGTATATATCTGCCAGTTTTCTTCTAACGTGGTCTGACAATCTCCAGAAGCTTGATTTCCAAGAGTTGGTAATGTTCCTTCAACACCTTCCAACTAAGAACTGGACTGACCAGGAGCTCGAGATGGTACTTTCTCGTGCATTTATGTGGCACAGCATGTTCAACAACTCTCCGAGTCATTTAGCTAACTGA 1356 0.4167 MKNDHNNNAEHNKDTTVGILDSRFNQTLRNVQGLLKGRNIPGKILLSQRVESPDYTSLSSPTYIRSSSYSETGTSDQTSETVEEEVHSTSKPFGIPNENKLKISASNVESSSEELRKSSMGARATDSARVMKFTKVLSETMVKLEKLREFSWRGVPDYMRPTVWRLLLGYAPPNSDRREGVLKRKRLEYLDCVSQYYDIPDTERSDDEINMLRQIAVDCPRTVPEVSFFQQQQVQKSLERILYTWAIRHPASGYVQGINDLVTPFLVVFLSEYLEGGIDNWSMSDLSSDEISNVEADCYWCLSKLLDSMQDHYTFAQPGIQRLVFKLKELVRRIDDPVSNHMEEQGLEFLQFAFRWFNCLLIREIPFHLVTRLWDTYLAEGDALPDFLVYISASFLLTWSDNLQKLDFQELVMFLQHLPTKNWTDQELEMVLSRAFMWHSMFNNSPSHLAN* 452
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Gso11g3559 451 Pfam Rab-GTPase-TBC domain 158 401 IPR000195 -
Gso11g3559 451 MobiDBLite consensus disorder prediction 54 80 - -
Gso11g3559 451 Gene3D - 316 451 - -
Gso11g3559 451 ProSiteProfiles TBC/rab GAP domain profile. 154 381 IPR000195 -
Gso11g3559 451 PANTHER RAB-GTPASE-TBC DOMAIN-CONTAINING PROTEIN-RELATED 2 448 - -
Gso11g3559 451 SUPERFAMILY Ypt/Rab-GAP domain of gyp1p 317 439 IPR035969 -
Gso11g3559 451 PANTHER TBC1 DOMAIN FAMILY MEMBER GTPASE-ACTIVATING PROTEIN 2 448 - -
Gso11g3559 451 SUPERFAMILY Ypt/Rab-GAP domain of gyp1p 131 341 IPR035969 -
Gso11g3559 451 Gene3D putative rabgap domain of human tbc1 domain family member 14 like domains 190 315 - -
Gso11g3559 451 MobiDBLite consensus disorder prediction 54 79 - -
Gso11g3559 451 SMART tbc_4 151 407 IPR000195 -
Gso11g3559 451 Gene3D - 131 183 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Gso11g3559 Gso-Chr11 51359373 51364648 Dispersed/Wgd
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Gso11g3559 K20360 - gmx:100776049 890.567
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Gso15g0245 15 2223215 2229315 Gso11g3559 11 51359373 51364648 GST
Gso11g3559 11 51359373 51364648 Gso12g0412 12 3593006 3598852 PCT
Gso11g3559 11 51359373 51364648 Gso11g1065 11 9509705 9515784 PCT
Gso12g0412 12 3593006 3598852 Gso11g3559 11 51359373 51364648 PCT
Gso11g1065 11 9509705 9515784 Gso11g3559 11 51359373 51364648 PCT