Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Gso11g1065 ATGAACAAGCGCCAAGAAGATTTGCGCAACATAGCTACTACCCTCGACTCCAGATTCAATCAGACCCTCAGAAATGTTCAAGGGTTACTCAAAGGTCGAAGCATACCCGGTAAAATATTATTGAGCCGTAGGGTAGATCCTCCCGATAACTCAAACTCGAAGATATCCTCACCAAATTACAAAAGGAGCTTTTCTCACAATGATGCTGGTACAAGTGATAACACATCTGGGGCAGTAGAGGAGGAGTTTCAGAGTAAAAGCAAACCAATTAGTATTGCCAATGCCAATAAGCTAAAAGTGTCGACCTCCCTTGGAGGGAGCCCACCCGAAGAATTCCACAAGTCTACCATGGGTGCTAGAGCTACAGATTCTGCAAGAATTATGAAGTTCACCAAGGTGCTTTCTGGGACGGTGGTTATATTAGACAAGTTGCGGGAATTAGCTTGGAGTGGTGTTCCAGACAATATGCGTCCTAAAGTGTGGAGACTTCTGTTGGGATATGCACCACCTAATTCAGATAGAAGGGAGGGAGTTCTAAGAAGGAAGCGCCTTGAGTATCTTGACTGTATTTCTCAGTATTATGATATTCCTGATACAGAACGTTCAGATGATGAGGTCAACATGCTTCATCAGATTGGTATTGATTGTCCAAGAACTGTTCCTGATGTTCCATTCTTCCAGCAGCAGCAAGTTCAGAAATCATTGGAACGTATTCTTTATGCATGGGCCATTCGACATCCTGCAAGTGGATATGTTCAGGGGATAAATGATCTTGTTACGCCATTTTTGGTTGTTTTCTTATCAGAACATTTTGAAGGGGATATCGATAATTGGTCAATGTCTGATTTATCTTCAGATATAATCTCTAATATAGAGGCTGACTGCTACTGGTGCTTGTCAAAGTTGCTTGATGGTATGCAAGACCATTACACATTCGCTCAACCTGGAATTCAGAGGCTTGTTTTTAAGTTGAAGGAATTGGTCAGGAGGATTGATGAGCCTGTTTCACGGCACATTGAGGATCAGGGACTTGAATTTCTTCAGTTTGCTTTCCGCTGGTTCAACTGTCTTCTCATCCGTGAGATACCATTCCATCTCATCACACGCCTTTGGGACACATATTTAGCTGAAGGAGATGCCTTACCAGACTTCCTAGTATATATATTTGCCAGCTTCCTTCTAACGTGGTCAGACAAGCTCCAGAAACTTCATTTCCAAGAATTGGTAATGTTCCTTCAACACCTTCCAACAGAGAACTGGACTCACCGGGAGCTTGAGATGGTGCTTTCCCGAGCATTTATGTGGCACACCATGTTCAACAACTCTCCTAGCCATTTAGCTAGCTGA 1347 0.4306 MNKRQEDLRNIATTLDSRFNQTLRNVQGLLKGRSIPGKILLSRRVDPPDNSNSKISSPNYKRSFSHNDAGTSDNTSGAVEEEFQSKSKPISIANANKLKVSTSLGGSPPEEFHKSTMGARATDSARIMKFTKVLSGTVVILDKLRELAWSGVPDNMRPKVWRLLLGYAPPNSDRREGVLRRKRLEYLDCISQYYDIPDTERSDDEVNMLHQIGIDCPRTVPDVPFFQQQQVQKSLERILYAWAIRHPASGYVQGINDLVTPFLVVFLSEHFEGDIDNWSMSDLSSDIISNIEADCYWCLSKLLDGMQDHYTFAQPGIQRLVFKLKELVRRIDEPVSRHIEDQGLEFLQFAFRWFNCLLIREIPFHLITRLWDTYLAEGDALPDFLVYIFASFLLTWSDKLQKLHFQELVMFLQHLPTENWTHRELEMVLSRAFMWHTMFNNSPSHLAS* 449
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Gso11g1065 448 PANTHER TBC1 DOMAIN FAMILY MEMBER GTPASE-ACTIVATING PROTEIN 4 445 - -
Gso11g1065 448 Gene3D putative rabgap domain of human tbc1 domain family member 14 like domains 188 312 - -
Gso11g1065 448 ProSiteProfiles TBC/rab GAP domain profile. 151 378 IPR000195 -
Gso11g1065 448 Gene3D - 313 448 - -
Gso11g1065 448 PANTHER GTPASE-ACTIVATING PROTEIN GYP1-LIKE 4 445 - -
Gso11g1065 448 SMART tbc_4 148 404 IPR000195 -
Gso11g1065 448 MobiDBLite consensus disorder prediction 46 84 - -
Gso11g1065 448 Pfam Rab-GTPase-TBC domain 154 399 IPR000195 -
Gso11g1065 448 SUPERFAMILY Ypt/Rab-GAP domain of gyp1p 314 436 IPR035969 -
Gso11g1065 448 Gene3D - 128 177 - -
Gso11g1065 448 SUPERFAMILY Ypt/Rab-GAP domain of gyp1p 128 338 IPR035969 -
Gso11g1065 448 MobiDBLite consensus disorder prediction 41 84 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Gso11g1065 Gso-Chr11 9509705 9515784 Dispersed/Wgd
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Gso11g1065 K20360 - gmx:100819281 900.582
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Gso11g1065 11 9509705 9515784 Gso11g1065 11 9509705 9515784 ECH
Gso12g0412 12 3593006 3598852 Gso11g1065 11 9509705 9515784 GST
Gso15g0245 15 2223215 2229315 Gso11g1065 11 9509705 9515784 PCT
Gso11g3559 11 51359373 51364648 Gso11g1065 11 9509705 9515784 PCT
Gso11g1065 11 9509705 9515784 Gso15g0245 15 2223215 2229315 PCT
Gso11g1065 11 9509705 9515784 Gso11g3559 11 51359373 51364648 PCT