Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Gso12g0412 ATGAACAAGCGCCAAGAAGATGTGCGCAACATAGCTACTACCCTCGACTCCAGATTCAATCAGACCCTCAGAAATGTTCAAGGGTTACTCAAAGGTCGTAGTATACCCGGTAAAATATTATTGAGCCGTAGGGTAGACCCTCCGGATAACTCAAACTCGAAGGTATCCTCACCAAATTACAAAAGGAGCTTTTCTCACAATGATGCTGGCACAAGTGATCACACATCTGGGGCAGTAGAGGAGGAATTTCAGAGTACAAGCAAACCAATTAGTATTGCCAATGCCAGTAAGCTAAAAGTGTCGACCTCCCTTGGAGGGAGCCCGCCTGAAGAATTCCGTAAGTCTACGATGGGTGCTAGAGCTACAGATTCTGCAAGAGTTATGAAGTTCACTAAGGTGCTTTCAGGGACTGTGGTTATATTAGACAAGTTGCGGGAATTAGCTTGGAGTGGTGTTCCAGACAATATGCGTCCTAAAGTGTGGAGACTTCTGTTGGGATATGCACCACCTAATTCAGATAGAAGGGAGGGAGTTCTAAGAAGGAAACGCCTTGAGTATCTTGACTGTATTTCTCAGTATTATGATATTCCTGATACAGAACGTTCAGATGACGAGGTCAACATGCTTCGTCAGATTGGTGTTGATTGTCCAAGAACTGTTCCCGATGTTCCATTCTTCCAGCAGCAGCAAGTTCAGAAATCATTGGAACGTATTCTTTATGCATGGGCCATTCGACATCCTGCAAGTGGATATGTTCAGGGGATAAATGATCTTGTTACACCATTTTTGGTTGTTTTCTTATCAGAATATTTTGAAGGGGATATCAATAATTGGTCAATGTCTGATTTATCTTCAGATATAATCTCTAATATAGAGGCTGACTGCTACTGGTGCTTGTCAAAGTTGCTTGATGGTATGCAAGACCATTACACATTCGCTCAACCTGGAATTCAGAGGCTTGTTTTTAAGTTGAAGGAATTGGTCAGGAGGATTGATGAGCCTGTTTCGCGGCACATCGAGGATCAGGGACTTGAATTTCTTCAGTTTGCTTTCCGCTGGTTCAACTGTCTTCTCATCCGTGAGATACCATTCCATCTCATCACACGCCTTTGGGACACATATTTAGCTGAAGGAGATGCCTTACCAGACTTCCTAGTATATATATTTGCCAGCTTCCTTCTAACGTGGTCAGACAAACTCCAGAAACTTGATTTCCAAGAATTGGTAATGTTTCTTCAACACCTTCCAACAGAGAACTGGACTCACCAGGAGCTTGAGATGGTGCTTTCCCGGGCATTTATGTGGCACACCATGTTCAACAACTCTCCTAGCCATTTAGCTAGCTGA 1347 0.4336 MNKRQEDVRNIATTLDSRFNQTLRNVQGLLKGRSIPGKILLSRRVDPPDNSNSKVSSPNYKRSFSHNDAGTSDHTSGAVEEEFQSTSKPISIANASKLKVSTSLGGSPPEEFRKSTMGARATDSARVMKFTKVLSGTVVILDKLRELAWSGVPDNMRPKVWRLLLGYAPPNSDRREGVLRRKRLEYLDCISQYYDIPDTERSDDEVNMLRQIGVDCPRTVPDVPFFQQQQVQKSLERILYAWAIRHPASGYVQGINDLVTPFLVVFLSEYFEGDINNWSMSDLSSDIISNIEADCYWCLSKLLDGMQDHYTFAQPGIQRLVFKLKELVRRIDEPVSRHIEDQGLEFLQFAFRWFNCLLIREIPFHLITRLWDTYLAEGDALPDFLVYIFASFLLTWSDKLQKLDFQELVMFLQHLPTENWTHQELEMVLSRAFMWHTMFNNSPSHLAS* 449
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Gso12g0412 448 MobiDBLite consensus disorder prediction 46 83 - -
Gso12g0412 448 PANTHER TBC1 DOMAIN FAMILY MEMBER GTPASE-ACTIVATING PROTEIN 13 445 - -
Gso12g0412 448 ProSiteProfiles TBC/rab GAP domain profile. 151 378 IPR000195 -
Gso12g0412 448 Gene3D - 127 177 - -
Gso12g0412 448 PANTHER RAB-GTPASE-TBC DOMAIN-CONTAINING PROTEIN-RELATED 13 445 - -
Gso12g0412 448 MobiDBLite consensus disorder prediction 40 83 - -
Gso12g0412 448 SUPERFAMILY Ypt/Rab-GAP domain of gyp1p 314 436 IPR035969 -
Gso12g0412 448 Gene3D - 313 448 - -
Gso12g0412 448 SUPERFAMILY Ypt/Rab-GAP domain of gyp1p 129 338 IPR035969 -
Gso12g0412 448 Pfam Rab-GTPase-TBC domain 154 399 IPR000195 -
Gso12g0412 448 Gene3D putative rabgap domain of human tbc1 domain family member 14 like domains 188 312 - -
Gso12g0412 448 SMART tbc_4 148 404 IPR000195 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Gso12g0412 Gso-Chr12 3593006 3598852 Wgd
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Gso12g0412 K20360 - gmx:100819281 876.7
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Gso12g0412 12 3593006 3598852 Gso11g1065 11 9509705 9515784 GST
Gso15g0245 15 2223215 2229315 Gso12g0412 12 3593006 3598852 PCT
Gso11g3559 11 51359373 51364648 Gso12g0412 12 3593006 3598852 PCT
Gso12g0412 12 3593006 3598852 Gso15g0245 15 2223215 2229315 PCT
Gso12g0412 12 3593006 3598852 Gso11g3559 11 51359373 51364648 PCT