Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Gso13g1377 ATGGCCAGTCACAACTACAAAGTCTTCAGCTGCTTCAACAGGAAGTTCACCGTCACCGAGCCGGGCCCACCGCCCGACGTAGAAAGAGCGTTTTCTGAATTCGCCGCCGGCGCCTCCTCCCTGTCCGGCGATCACATCCTCCGGTTTCTGGCGGAGCACCAGGGCGATGTGGACTGCACCGCAGCGGATTCGGAGCGGATCCTCCAGCAATCGCGGAAAGAGGATCGGGAAAGTGGAATGGATCTCCACGACTTCTTCCGTTTCCTGCTACATGACGATTTCAATAGCCCCATCAAATCTCAGGTACATCATGATATGAATGCTCCATTGTCACATTATTTCATATATACTGGGCACAATTCCTATCTTACTGGGAATCAACTGAGCAGTGACTGCAGTGATGTGCCAATCATAAAGGCTTTGCAAGGAGGTGTAAGAGTAATTGAACTAGATTTATGGCCAAATTCAGACAAAGATGATATCGAAGTAGTTCATGGAAGGACTCTTACGACTCCTGTCTCACTCATCCAATGTTTGAAGTCCATAAAAGAGTATGCTTTTGTTAAATCTCACTACCCACTCATTATAACTTTAGAAGATCACCTTACTCCAGATCTTCAAGCTAAAGCTGCAGAGATGGCAACTCAAGTATTTGGAGAATTGCTTTATTATCCTCAGACAGATTCTCTGATGGAATTCCCCTCACCGGAATCATTGAAAGGTCGAATTCTTATATCAACAAAACCACCAAAAGAATTTCTTGAATCCAAAGAATGTGATGACAAGGACAACGAAAAGGAATCAGCCGACGAGGTTTTGTCATTGCCAGACCAAACAAGTGAACGGGAAACTGATGATAAGAGTGCACCTGAGTACAAACGATTGATTACAATCCATGCTGGGAAACCAAAGGGTGATATTCAGGATGAATTAAAAGCTGCTGGTGCTGTTAGGCGCTTAAGCTTGAGTGAACAAGCACTTGAAAAGGCTTCTGAATCTTATGGAGCTGATATTGTTAGGTTTACGCAGAACAATATTCTCAGAGTATATCCAAAGGGAACACGTCTCAATTCCTCAAATTACAAGCCACACATAGGGTGGACATACGGAGCTCAGATGGTTGCGTTCAACATGCAGGGGTATGGAAAATCACTTCGGTACATGCAAGGAATGTTTAGAGCAAATGGAGGGTGCGGTTATGTGAAAAAGCCTGAATTTCTAATTGAAAAAGGTCCATATAATGAGGTTTTTGATCCTAAAAGAACATTGCCCGTGAAGAAAACATTAAAGGTAAAAGTCTATATGGGGACCGGTTGGAGCTTAGATTTCAGCCAAACAGACTTCGATACTTACTCACCACCCGACTTTTACGTTAAGGTTTGTATTGTTGGAGTTCCAGCTGATATGGCCAAGAAGAAAACATGTGTAATTTCAAATAACTGGTTTCCTGTCTGGGATGAACAGTTTGATTTCCCTTTGACTGTTCCAGAGCTGGCTTTGCTCCGCATAGAAGTTCGAGAGAATGACAAGAGTCAAAAGGATGACTTTGGTGGACAGACGTGTTTGCCTGTCTCAGAGCTAAAATCTGGATTCCGATCAGTCCCTCTGTATGATGAAAAGGGTGACAAATTAAAGTCTGTGAAGCTTCTAATGCGGTTTCAGTTTAGATGA 1671 0.4351 MASHNYKVFSCFNRKFTVTEPGPPPDVERAFSEFAAGASSLSGDHILRFLAEHQGDVDCTAADSERILQQSRKEDRESGMDLHDFFRFLLHDDFNSPIKSQVHHDMNAPLSHYFIYTGHNSYLTGNQLSSDCSDVPIIKALQGGVRVIELDLWPNSDKDDIEVVHGRTLTTPVSLIQCLKSIKEYAFVKSHYPLIITLEDHLTPDLQAKAAEMATQVFGELLYYPQTDSLMEFPSPESLKGRILISTKPPKEFLESKECDDKDNEKESADEVLSLPDQTSERETDDKSAPEYKRLITIHAGKPKGDIQDELKAAGAVRRLSLSEQALEKASESYGADIVRFTQNNILRVYPKGTRLNSSNYKPHIGWTYGAQMVAFNMQGYGKSLRYMQGMFRANGGCGYVKKPEFLIEKGPYNEVFDPKRTLPVKKTLKVKVYMGTGWSLDFSQTDFDTYSPPDFYVKVCIVGVPADMAKKKTCVISNNWFPVWDEQFDFPLTVPELALLRIEVRENDKSQKDDFGGQTCLPVSELKSGFRSVPLYDEKGDKLKSVKLLMRFQFR* 557
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Gso13g1377 556 Pfam C2 domain 429 530 IPR000008 -
Gso13g1377 556 Gene3D C2 domain 423 556 IPR035892 -
Gso13g1377 556 SUPERFAMILY PLC-like phosphodiesterases 104 409 IPR017946 GO:0006629|GO:0008081
Gso13g1377 556 MobiDBLite consensus disorder prediction 254 290 - -
Gso13g1377 556 Pfam Phosphatidylinositol-specific phospholipase C, X domain 106 248 IPR000909 -
Gso13g1377 556 PANTHER PHOSPHOINOSITIDE-SPECIFIC PHOSPHOLIPASE C FAMILY PROTEIN 2 555 IPR001192 GO:0035556
Gso13g1377 556 SMART plcy_3 292 408 IPR001711 GO:0004435|GO:0006629|GO:0007165|GO:0035556
Gso13g1377 556 CDD C2_PLC_like 426 556 - -
Gso13g1377 556 SUPERFAMILY C2 domain (Calcium/lipid-binding domain, CaLB) 428 555 IPR035892 -
Gso13g1377 556 ProSiteProfiles C2 domain profile. 409 538 IPR000008 -
Gso13g1377 556 Pfam Phosphatidylinositol-specific phospholipase C, Y domain 318 406 IPR001711 GO:0004435|GO:0006629|GO:0007165|GO:0035556
Gso13g1377 556 CDD PI-PLCc_plant 103 395 - -
Gso13g1377 556 SMART C2_3c 428 536 IPR000008 -
Gso13g1377 556 ProSiteProfiles Phosphatidylinositol-specific phospholipase X-box domain profile. 104 248 - -
Gso13g1377 556 ProSiteProfiles Phosphatidylinositol-specific phospholipase Y-box domain profile. 321 407 IPR001711 GO:0004435|GO:0006629|GO:0007165|GO:0035556
Gso13g1377 556 SMART plcx_3 104 248 IPR000909 -
Gso13g1377 556 Gene3D Phosphatidylinositol (PI) phosphodiesterase 101 421 IPR017946 GO:0006629|GO:0008081
Gso13g1377 556 PRINTS Phospholipase C signature 109 127 IPR001192 GO:0035556
Gso13g1377 556 PRINTS Phospholipase C signature 135 155 IPR001192 GO:0035556
Gso13g1377 556 PRINTS Phospholipase C signature 232 249 IPR001192 GO:0035556
Gso13g1377 556 PRINTS Phospholipase C signature 346 367 IPR001192 GO:0035556
Gso13g1377 556 PRINTS Phospholipase C signature 367 385 IPR001192 GO:0035556
Gso13g1377 556 PRINTS Phospholipase C signature 522 532 IPR001192 GO:0035556
Gso13g1377 556 Gene3D - 23 100 - -
Gso13g1377 556 PANTHER PHOSPHOINOSITIDE PHOSPHOLIPASE C 6 2 555 - -
Gso13g1377 556 SUPERFAMILY EF-hand 6 106 IPR011992 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Gso13g1377 Gso-Chr13 29284387 29290626 Tandem
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Gso13g1377 2 555 Acyl Lipid Metabolism Gene Families AT2G40116 61.065 0.0 736
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Gso13g1377 K05857 - gmx:100799027 1112.06
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Gso18g0242 18 2105213 2110743 Gso13g1377 13 29284387 29290626 GST
Gso13g1377 13 29284387 29290626 Gso14g0503 14 4822643 4827824 PCT
Gso13g1377 13 29284387 29290626 Gso2g2186 2 46532514 46537384 PCT
Gso14g0503 14 4822643 4827824 Gso13g1377 13 29284387 29290626 PCT
Gso2g2186 2 46532514 46537384 Gso13g1377 13 29284387 29290626 PCT