Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Gso13g1376 ATGAAAACAGAGAAAAACAGAGGCTCTGCTTCCAAGGGCAAGGTGAGAAAGAAAATGGAAACATACATAATCAAGGTGTTAAATTTCTTGACCAAAAAAGGTGAAGTCTACAAGGCAGAGCCACCCTTGGACCTTAAGGAAGCCTTTTCCAAGTTTGCTGGAGGAGAGAATCAAATGAAGAAGGATCAGCTTCTTCGGTTCATGGTGGAACACCAGGGAGAAAATAATATTAGCACCATGGAGGATTTGGATAAAATAGTTGAAAAGTTTTTGCAACTAAGAAATTCTTGTTCTAGCACCAAAACTAGCTCCACAAGAATTGTAGATGTTTATAGGAAACAAGGATTGAGTCTCAATGACTTCATCGATTTTCTGATTCTTGATGATTTCAACGGTCCCTTGAAAGACAAGGTACATCATGATATGAATGCTCCCTTGTCACATTATTTCATGTATACGGGACACAATTCCTATCTGACTGGGAATCAACTTACCAGTGAGAGCAGTGACGAGCCAATCATAGAGGCTTTGAAACAAGGCGTACGAGTAATTGAACTAGATTTATGGCCATCCAAGTCTTCAAATAATGATGGAATTAAAGTGGTTCATGGAAGGACTTTTACCACTCCAGTTCCGGTATCCAAATGTCTACAATCCATAAAGGATTATGCATTTCATAAATCTGATTATCCAGTAATTCTAACTTTGGAAGACCACCTAACACCAAAACATCAGGATAAATTTGCAAAAATGGCAACTGAAATATTTGGAGAAATGCTTTACTGTCCTGAGACAGATTGTTTGACAGAATTCCCCTCACCAGAATCATTGAAAAAACGGATAATTATATCAACCAAACCTCCAAAGGAATATCAACAATCTGATAGTATCAGAAAACCTATGCCAAATGGAAGTGAACCATCTGAAGAAGAATCATGGGGCCCTGAATTGCCAGATTCGGTGGCTAAACTGAAAACTGAGGATAGGCAGAATTCAAGTGATGAAGATCAGGAAGATATAAATACAAGTGATAACAAATCAAACCAACAAGGCGTGCGTCAATACAAACACTTGATTGCAATCCATGGAGGGAAATCAAAAGGTTCTATGAAGAATCGGCTGAAAGATGATGTTAAAGTTAGACGGCTAAGTTTGAGTGAGAAGAAACTCAAAAGTGCTTCCGAGTCTCATGGAGCCGACCTTATTAGGTTCACACAGAGAAATATCCTCAGAGTTTTTCCTAAAGGAGAACGTGTCAAATCGACAAATTTCAGGCCGTATATAGGGTGGCTGTATGGAGTTCAGATGGTTGCATTCAATATGCAGGGGCATGGCAAATCACTCCGGTTGATGCAGGGTATGTTCAGAGCAAATGGAGGATGTGGTTATGTTAAAAAGCCTGAATTTCTGATCCGAACACTTCCACATGAAGAGGTGTTTGATCCAAAAAAACCGCCATCAAGGAAGCAGATATTAAAAGTAAAAGTATACAAAGGAGATGGCTGGAGATTAGATTTCAGCCCAACACACTTTGATCGATTCTCTCCACCAGACTTTTACACAAAGGTAAGTATTGTTGGAGTGCCAGCTGATTGTGCCAAGAACAAAACAAGAGTAAAGACGGATACATGGTATCCTGTTTGGGATGAAGAATTTGAATTCAAATTGAGGGTTCCAGAGCTTGCTTTGCTTCGGATAGAAGTAAAGGACAAAGATAAGGGAAAAGATGACTTTGCCGGACAAACTTGTTTGCCATTATCAGAGCTAAGGCATGGATTTCGGTCAGTCCCTCTCTATGACAGAAAGGGAAAGAAATATAAATCTGTGACGCTTCTAATGCGGTTTAAGCTTGAAACTTTAAATTAA 1866 0.3928 MKTEKNRGSASKGKVRKKMETYIIKVLNFLTKKGEVYKAEPPLDLKEAFSKFAGGENQMKKDQLLRFMVEHQGENNISTMEDLDKIVEKFLQLRNSCSSTKTSSTRIVDVYRKQGLSLNDFIDFLILDDFNGPLKDKVHHDMNAPLSHYFMYTGHNSYLTGNQLTSESSDEPIIEALKQGVRVIELDLWPSKSSNNDGIKVVHGRTFTTPVPVSKCLQSIKDYAFHKSDYPVILTLEDHLTPKHQDKFAKMATEIFGEMLYCPETDCLTEFPSPESLKKRIIISTKPPKEYQQSDSIRKPMPNGSEPSEEESWGPELPDSVAKLKTEDRQNSSDEDQEDINTSDNKSNQQGVRQYKHLIAIHGGKSKGSMKNRLKDDVKVRRLSLSEKKLKSASESHGADLIRFTQRNILRVFPKGERVKSTNFRPYIGWLYGVQMVAFNMQGHGKSLRLMQGMFRANGGCGYVKKPEFLIRTLPHEEVFDPKKPPSRKQILKVKVYKGDGWRLDFSPTHFDRFSPPDFYTKVSIVGVPADCAKNKTRVKTDTWYPVWDEEFEFKLRVPELALLRIEVKDKDKGKDDFAGQTCLPLSELRHGFRSVPLYDRKGKKYKSVTLLMRFKLETLN* 622
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Gso13g1376 621 Gene3D Phosphatidylinositol (PI) phosphodiesterase 136 484 IPR017946 GO:0006629|GO:0008081
Gso13g1376 621 MobiDBLite consensus disorder prediction 321 342 - -
Gso13g1376 621 MobiDBLite consensus disorder prediction 287 301 - -
Gso13g1376 621 SMART C2_3c 491 598 IPR000008 -
Gso13g1376 621 MobiDBLite consensus disorder prediction 279 352 - -
Gso13g1376 621 Pfam Phosphatidylinositol-specific phospholipase C, X domain 142 286 IPR000909 -
Gso13g1376 621 Gene3D - 41 132 - -
Gso13g1376 621 PANTHER PHOSPHOINOSITIDE-SPECIFIC PHOSPHOLIPASE C FAMILY PROTEIN 19 621 IPR001192 GO:0035556
Gso13g1376 621 SUPERFAMILY PLC-like phosphodiesterases 140 472 IPR017946 GO:0006629|GO:0008081
Gso13g1376 621 SUPERFAMILY C2 domain (Calcium/lipid-binding domain, CaLB) 491 616 IPR035892 -
Gso13g1376 621 CDD C2_PLC_like 489 618 - -
Gso13g1376 621 ProSiteProfiles Phosphatidylinositol-specific phospholipase Y-box domain profile. 384 470 IPR001711 GO:0004435|GO:0006629|GO:0007165|GO:0035556
Gso13g1376 621 Pfam Phosphatidylinositol-specific phospholipase C, Y domain 381 469 IPR001711 GO:0004435|GO:0006629|GO:0007165|GO:0035556
Gso13g1376 621 Gene3D C2 domain 486 621 IPR035892 -
Gso13g1376 621 ProSiteProfiles C2 domain profile. 473 600 IPR000008 -
Gso13g1376 621 ProSiteProfiles Phosphatidylinositol-specific phospholipase X-box domain profile. 140 286 - -
Gso13g1376 621 PRINTS Phospholipase C signature 145 163 IPR001192 GO:0035556
Gso13g1376 621 PRINTS Phospholipase C signature 171 191 IPR001192 GO:0035556
Gso13g1376 621 PRINTS Phospholipase C signature 270 287 IPR001192 GO:0035556
Gso13g1376 621 PRINTS Phospholipase C signature 409 430 IPR001192 GO:0035556
Gso13g1376 621 PRINTS Phospholipase C signature 430 448 IPR001192 GO:0035556
Gso13g1376 621 PRINTS Phospholipase C signature 584 594 IPR001192 GO:0035556
Gso13g1376 621 SMART plcx_3 140 286 IPR000909 -
Gso13g1376 621 PANTHER PHOSPHOINOSITIDE PHOSPHOLIPASE C 19 621 - -
Gso13g1376 621 Pfam C2 domain 491 591 IPR000008 -
Gso13g1376 621 SMART plcy_3 355 471 IPR001711 GO:0004435|GO:0006629|GO:0007165|GO:0035556
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Gso13g1376 Gso-Chr13 29277845 29282341 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Gso13g1376 21 618 Acyl Lipid Metabolism Gene Families AT2G40116 53.635 0.0 642
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Gso13g1376 K05857 - gmx:100803435 1195.65
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Gso18g0243 18 2111863 2116399 Gso13g1376 13 29277845 29282341 GST
Gso13g1376 13 29277845 29282341 Gso14g0504 14 4831850 4836268 PCT
Gso13g1376 13 29277845 29282341 Gso2g2185 2 46524883 46528931 PCT
Gso14g0504 14 4831850 4836268 Gso13g1376 13 29277845 29282341 PCT
Gso2g2185 2 46524883 46528931 Gso13g1376 13 29277845 29282341 PCT