Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Gso13g1350 ATGACGGAGGATCGGAACGTGCGGAAGACACGTGTGGTCGACCTGGTCCTCGACTGTGTCATCCCTTACATCGACGACCCCAAGGACCGCGACGCCGTCTCCCAGGTCTGCCGACGCTGGTACGAACTCGACTCCCTCACTCGGAAGCACGTCACCATCGCGCTCTGCTACACCACCACGCCGGCGCGCCTCCGCCGCCGCTTCCCGCACCTTGAGTCGCTCAAGCTCAAGGGCAAGCCCCGAGCAGCAATGTTCAACTTGATACCCGAGGATTGGGGAGGCCACGTCACCCCATGGGTCAAGGAGATTTCTCAGTACTTCGATTGCCTCAAGAGTCTCCACTTCCGCCGTATGATTGTCAAAGATTCCGATCTTCGGAATCTCGCTCGTGACCGCGGCCACGTGCTTCACTCTCTCAAGCTTGACAAGTGCTCCGGTTTCACCACCGATGGTCTTTTCCATATCGGTCGCTTTTGCAAGAGTTTAAGAGTCTTGTTTTTGGAGGAAAGCTCAATTGTTGAGAAGGACGGAGAATGGTTACACGAGCTTGCTTTGAATAATACAGTTCTTGAGACTCTCAATTTTTACTTGACAGATATTGCTGTTGTGAAGATTCAGGACCTTGAACTTTTAGCTAAAAATTGCCCCAACTTAGTGTCTGTGAAACTTACTGACAGTGAAATACTTGATCTTGTGAACTTCTTTAAGCATGCCTCTGCACTGGAAGAGTTTTGTGGAGGCACCTACAATGAAGAACCAGAAAAATACTCTGCTATATCATTACCAGCAAAGTTATGTCGATTGGGTTTAACATATATTGGAAAGAATGAGTTGCCCATAGTGTTCATGTTTGCAGCCGTACTAAAAAAATTGGATCTCCTCTATGCAATGCTAGACACGGAGGATCATTGCATGTTAATCCAAAAGTGTCCAAATCTGGAAGTCCTTGAGACAAGGAATGTAATTGGAGACAGAGGGTTAGAGGTTCTTGGTCGTTGTTGTAAGAGGCTAAAAAGGCTTAGGATTGAAAGGGGTGATGATGATCAAGGAATGGAGGATGAAGAAGGTACTGTGTCCCATAGAGGGCTAATCGCCTTGTCACAGGGCTGTTCAGAGCTTGAATACATGGCTGTTTATGTGTCGGATATTACAAATGCATCTCTGGAACATATCGGAACTCACTTGAAGAACCTCTGCGATTTTCGCCTTGTGTTGCTTGACCACGAAGAGAAAATAACTGATTTGCCACTTGACAATGGGGTGAGGGCTCTACTGAGGGGCTGTAACAAGCTGAGGAGATTTGCTCTATATCTCAGGCGTGGCGGGTTGACCGATGTAGGTCTTGGTTACATTGGACAGTACAGTCCAAATGTGAGATGGATGCTGCTTGGTTATGTGGGGGAGTCTGATGCAGGGCTTTTGGAATTCTCTAAAGGGTGTCCTAGTCTTCAGAAACTAGAAATGAGAGGGTGTTCATTTTTCAGTGAACGTGCACTTGCTGTGGCTGCAACACAATTGACTTCTCTTAGGTACTTGTGGGTGCAAGGGTATGGTGTATCTCCATCTGGACGTGATCTTTTGGCAATGGCTCGCCCCTTTTGGAACATTGAGTTAATTCCTTCTAGAAAGGTGGCTATGAATACCAATTCAGATGAGACGGTAGTTGTTGAGCATCCTGCTCATATTCTTGCATATTATTCTCTTGCAGGGCAGAGATCAGATTTTCCAGATACTGTTGTGCCTTTGGACACTGCCACATGCGTTGACACCTAG 1773 0.4721 MTEDRNVRKTRVVDLVLDCVIPYIDDPKDRDAVSQVCRRWYELDSLTRKHVTIALCYTTTPARLRRRFPHLESLKLKGKPRAAMFNLIPEDWGGHVTPWVKEISQYFDCLKSLHFRRMIVKDSDLRNLARDRGHVLHSLKLDKCSGFTTDGLFHIGRFCKSLRVLFLEESSIVEKDGEWLHELALNNTVLETLNFYLTDIAVVKIQDLELLAKNCPNLVSVKLTDSEILDLVNFFKHASALEEFCGGTYNEEPEKYSAISLPAKLCRLGLTYIGKNELPIVFMFAAVLKKLDLLYAMLDTEDHCMLIQKCPNLEVLETRNVIGDRGLEVLGRCCKRLKRLRIERGDDDQGMEDEEGTVSHRGLIALSQGCSELEYMAVYVSDITNASLEHIGTHLKNLCDFRLVLLDHEEKITDLPLDNGVRALLRGCNKLRRFALYLRRGGLTDVGLGYIGQYSPNVRWMLLGYVGESDAGLLEFSKGCPSLQKLEMRGCSFFSERALAVAATQLTSLRYLWVQGYGVSPSGRDLLAMARPFWNIELIPSRKVAMNTNSDETVVVEHPAHILAYYSLAGQRSDFPDTVVPLDTATCVDT* 591
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Gso13g1350 590 PANTHER F-BOX/TPR REPEAT PROTEIN POF3 10 585 - -
Gso13g1350 590 SMART LRR_CC_2 428 454 IPR006553 -
Gso13g1350 590 SMART LRR_CC_2 480 504 IPR006553 -
Gso13g1350 590 SMART LRR_CC_2 133 158 IPR006553 -
Gso13g1350 590 SMART LRR_CC_2 370 394 IPR006553 -
Gso13g1350 590 PANTHER CORONATINE-INSENSITIVE PROTEIN 1 10 585 - -
Gso13g1350 590 Pfam F-box 10 50 IPR041567 -
Gso13g1350 590 SUPERFAMILY RNI-like 87 400 - -
Gso13g1350 590 Gene3D - 2 48 - -
Gso13g1350 590 Pfam Transport inhibitor response 1 protein domain 69 115 IPR041101 -
Gso13g1350 590 SUPERFAMILY RNI-like 362 517 - -
Gso13g1350 590 Gene3D Ribonuclease Inhibitor 49 586 IPR032675 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Gso13g1350 Gso-Chr13 28970803 28974951 Dispersed/Wgd
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Gso13g1350 K13463 - gmx:732662 1173.69
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Gso18g0269 18 2385938 2390040 Gso13g1350 13 28970803 28974951 GST
Gso13g1350 13 28970803 28974951 Gso14g0528 14 5066800 5072536 PCT
Gso13g1350 13 28970803 28974951 Gso2g2164 2 46286685 46292222 PCT
Gso14g0528 14 5066800 5072536 Gso13g1350 13 28970803 28974951 PCT
Gso2g2164 2 46286685 46292222 Gso13g1350 13 28970803 28974951 PCT