Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Gso13g0621 ATGGAAATGAAGGCAAAGAACAACAACAACAAGAACAAGGTTGGGAGTGAATTGGGTTGTGGTCTCATGGGGAGAATTCTCCACCTCAAAAGCCACAAGATGAGAAAAGCATCTGTTCACTCCCTACCCTTGAAGAATGCACACAGTGATGATGATGATGTCAAAACTGAAGAATCAAAGGTTGCAAGAAAAAGCTTCACTCACACAGAGCCACCACACAAACTGAGTGGTGCAGAGCAGAAACCTGCCAGAATGAGTGTCTCTATTATTCACCACCAACAACAACAACCTTGTACAAATCGAAACAACCAACATCTGAGGCATTCAGATGTTGCTGCAAGAAGCTCAACATCATCGTTCACTAGTACTTCAATTTCATCTCACACTAAGTTTCAACAAAACCAGGACAAGGATCATGAGAGGAAGCCACGTGGAGACCCCACTGGAAATTCTCTTGCACTTGCTAGGATAAGCACTAGCAAAGAGAACAATGAGAACAAGAAGTCTCAATTGAAACTCACCGGGAATTTGCTTGTGAATAACACACCAAGAAGGAAGAGTGTGGAATACATGCCCAAGAGTGCAGAGCTGAACTCTGTTCGCAGTTCTTACACCAATGCAAGCAAAGTCTTGATGGGGAACATCATGAGGAGGAACAGCAACGAGGTTGCACAGTTTTTGAGTCCAAGGCTGAAAAAAATGGACCCTGAGGTGTTGAAATCCATGGGAAATGAAGCATACAAGCAGGGAAGATTTGAAGAGGCCTTGGCTTTGTATGATCAAGCAATTGCACTCGATTCGAATAAGGCGGTATATCATTGCAACAAGAGTGCAGCTTTAATTGGCTTAGGAAGGCTTCAGGAAGCAATTGTTGAGTCTGAGGAATCTATCAAGCTGGACCCTTCTTATGTCAGAGCCTACAATCGTTTGGCCACAATATATGTCAGGTTGGGAGAAGCAGAAAAAGCACTAGATTGCAATCAGTCAATCCCATATGTTGATTCAATACTTGCTTTCCAAGCTCAGGCTCTTCAAAATCACCTTAACAAATGCATAGAAGCACGGAAAGTCAATGCGTGGAGTGATATACTAAAGGAAACACAGTTTGCAATATCCTTAGGTGCTGATTCAGCTCCACAGGTCTATGCTTTACAAACTGAAGCCTTGCTGAAGCTCTTAAGATATCAAGAGGCCTATGTCATCTACGATAAAATGCCAAAATTTTCAATTGATTGGTGTACCAAGATGTTTGGCCCAGCTCGCAGCGCTTACCTGTTGGTGATAGGCTCAATGGTTTACTTGGCATCTGGCAGGTTTGAGGAAGCTGTGGCATCAACTCAGCAAGCAGCTAAAGTTGATCCAGGCAATAGAGAGGTGAATGCAATGGTAAGGAAGGCCAGAGCTGCAACATCAGCTAGAATGAGCGGAAACTTGCTCTTCAAGGCATCGAAATTCACCGAAGCATCTGGCGCGTACAACGAAGGACTAGAGCATGATCCACACAACTCAGTTCTACTATGCAACAGAGCTGCATGTCGTTCCAAACTTGGTCAAAATGAGAAAGCAATTGAAGATTGTAACGCGGCACTTATGGTTCAGCCAGGTTATAGCAAAGCAAGGCTAAGGAGGGCAGATTGCAACGCCAAGTTGGAAAGGTGGGAAGCTGCTATTCAAGACTACGAAATGCTATTAAGGGAAAGGCCAGGGGATGAGGAAGTGGCAAGGGCTTTGTTCGAAGCTCAGCTCCAACTCAAGGTGCTTCATGGTGAAGATATTAAGGACTTGAAATTTGGTTCAAACTTGGTTTCCATCTCAAGTAATGATCGGTTCAGACATTATGTAACCTCACCTGGTATGGCTGTGGTGCTCTTTAGCAACAAGACAACCCACAAGAAAGTGTTGCTAGTGTTGGAGCAAATCAGCAAGAGATTCCCATCAGTTAATTTCCTCAAGGTGGAAATCGAAGACCACCCCTACTTAGCAAAGTCAGAAGGTGTGAGCTCTATCCCAGCCTTCAAAATATACAAGAACGGATCAAGGGTTAAAGAAATCTCAGGCAACAACCACGAGTTGTTAGAAAGATCAGTTAAATTGTATAGCAGCTGA 2106 0.4378 MEMKAKNNNNKNKVGSELGCGLMGRILHLKSHKMRKASVHSLPLKNAHSDDDDVKTEESKVARKSFTHTEPPHKLSGAEQKPARMSVSIIHHQQQQPCTNRNNQHLRHSDVAARSSTSSFTSTSISSHTKFQQNQDKDHERKPRGDPTGNSLALARISTSKENNENKKSQLKLTGNLLVNNTPRRKSVEYMPKSAELNSVRSSYTNASKVLMGNIMRRNSNEVAQFLSPRLKKMDPEVLKSMGNEAYKQGRFEEALALYDQAIALDSNKAVYHCNKSAALIGLGRLQEAIVESEESIKLDPSYVRAYNRLATIYVRLGEAEKALDCNQSIPYVDSILAFQAQALQNHLNKCIEARKVNAWSDILKETQFAISLGADSAPQVYALQTEALLKLLRYQEAYVIYDKMPKFSIDWCTKMFGPARSAYLLVIGSMVYLASGRFEEAVASTQQAAKVDPGNREVNAMVRKARAATSARMSGNLLFKASKFTEASGAYNEGLEHDPHNSVLLCNRAACRSKLGQNEKAIEDCNAALMVQPGYSKARLRRADCNAKLERWEAAIQDYEMLLRERPGDEEVARALFEAQLQLKVLHGEDIKDLKFGSNLVSISSNDRFRHYVTSPGMAVVLFSNKTTHKKVLLVLEQISKRFPSVNFLKVEIEDHPYLAKSEGVSSIPAFKIYKNGSRVKEISGNNHELLERSVKLYSS* 702
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Gso13g0621 701 CDD TRX_family 610 688 - -
Gso13g0621 701 ProSiteProfiles TPR repeat profile. 469 502 IPR019734 GO:0005515
Gso13g0621 701 SUPERFAMILY TPR-like 236 458 IPR011990 GO:0005515
Gso13g0621 701 Pfam Tetratricopeptide repeat 491 524 - -
Gso13g0621 701 Gene3D Tetratricopeptide repeat domain 235 587 IPR011990 GO:0005515
Gso13g0621 701 ProSiteProfiles TPR repeat profile. 423 456 IPR019734 GO:0005515
Gso13g0621 701 MobiDBLite consensus disorder prediction 132 146 - -
Gso13g0621 701 Gene3D Glutaredoxin 595 700 - -
Gso13g0621 701 MobiDBLite consensus disorder prediction 45 77 - -
Gso13g0621 701 SUPERFAMILY Thioredoxin-like 590 693 IPR036249 -
Gso13g0621 701 Pfam TPR repeat 243 275 - -
Gso13g0621 701 ProSiteProfiles TPR repeat profile. 236 269 IPR019734 GO:0005515
Gso13g0621 701 PANTHER TPR REPEAT-CONTAINING THIOREDOXIN 9 700 IPR044534 -
Gso13g0621 701 SMART tpr_5 270 303 IPR019734 GO:0005515
Gso13g0621 701 SMART tpr_5 236 269 IPR019734 GO:0005515
Gso13g0621 701 SMART tpr_5 304 336 IPR019734 GO:0005515
Gso13g0621 701 SMART tpr_5 537 570 IPR019734 GO:0005515
Gso13g0621 701 SMART tpr_5 422 456 IPR019734 GO:0005515
Gso13g0621 701 SMART tpr_5 469 502 IPR019734 GO:0005515
Gso13g0621 701 SMART tpr_5 503 536 IPR019734 GO:0005515
Gso13g0621 701 MobiDBLite consensus disorder prediction 40 151 - -
Gso13g0621 701 PANTHER 43KDA POSTSYNAPTIC PROTEIN-RELATED 9 700 - -
Gso13g0621 701 Pfam Thioredoxin 609 692 IPR013766 -
Gso13g0621 701 MobiDBLite consensus disorder prediction 87 131 - -
Gso13g0621 701 SUPERFAMILY TPR-like 473 585 IPR011990 GO:0005515
Gso13g0621 701 Coils Coil 543 563 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Gso13g0621 Gso-Chr13 20167224 20171056 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Gso13g0621 230 539 Glycosyltransferase AT3G04240 21.406 2.47e-08 55.5
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Gso13g0621 K09527 - gmx:100791862 1350.11
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Gso14g1443 14 44892069 44895745 Gso13g0621 13 20167224 20171056 GST
Gso13g0621 13 20167224 20171056 Gso4g0892 4 9629557 9633367 PCT
Gso13g0621 13 20167224 20171056 Gso6g0881 6 8390143 8394210 PCT
Gso4g0892 4 9629557 9633367 Gso13g0621 13 20167224 20171056 PCT
Gso6g0881 6 8390143 8394210 Gso13g0621 13 20167224 20171056 PCT