Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Gso12g1713 ATGGTGGGCTCAGTGCCTTGTTTGGCCTTTTTCTATCTACTTGCCTTGTGGAAACTGACACCCACCAACACTAAAATTTATTCATTTTTATTTGCAACACTTGCCAATGCCCCAGCCCGCAGCAGCACCATCAATAACCCTTCTTCAATGGAGCCCCCAGTTCTCAGTTTCAATAGCAATGACACCACCAACAATGGCAACTGCACCACTGACTTTGATATCATTACCTGGTTTGAAGACGTTTCCAAGAACGCTGGTTCTGTTCAGACTCAGACACTCTGCAAGATTCTTAAGCAGAACTATGGGGTTGAATATCTAAAGACATGGTTGGGGAGCTACAATATCTCAGAAATGGATGCATGTGCCTTGGAATCTCTTTTTACTTCTGTGGTTCCCCTTGCTTCACATGCAGATTTCGAGCCATATATCCAAAAAATTGCAGATGGAGACACAGGTCCTATACTCACACAACAACCCATAACCACTCTCTCCTTAAGTTCTGGAACCACAGAGGGAAGGCAGAAGTTCGTACCCTTTACCCGCCATAGTGCTCAAACGACCCTGCAAACTATCACTTTAGCAGCAGCCTATAGATCAAGGGTTTATCCGACAAGGGAAGGAGGTAGGATTCTTGAATTTATATACAGCAGCAATCAGTTCAAAACAAAAGGAGGATTAAAAGTTGGAACAGCCACAACACACTACTATGCAAGTGAAGAATTCAAAACCAAACAAGAGAAAACAAAGGCATTCACTTGCAGCCCCTATGAGGTTATTTCTGGGGGGGACTATAAACAATCCACGTACTGCCACCTCCTTCTTGGGCTCTTCTTCTCTGATCACGTAGAGTTTATTTCCTCAGCTTTTGCCTATGGCATAGTGCAAGCATTTTGCACTTTCGAAGAGGTTTGGAGAGACCTTTGCAATGACATAAGAGATGGCACTTTGAGTTCAAGAATCATGTTACCCCAAATGAGAGAGGCTGTTTTGGGTACAATAACTTCAAACCCCTCTTTGGCCTCAAAACTAGAAGAAGCTTGCTTGGAGCTAGAAGTGGTGGATTGGTTTGGTTTGGTTCCAAAACTTTGGCCAAATGCCAAGTACCTTTATTCCATAATGACAGGTTCTATGCAACCTTATTTGAAAAAGCTTAGGCATTATGCAAATGGGGTGCCACTAATAAGTGCTGACTATGGTTCAACTGAGAGTTGGATAGGGGTTAATGTGGATCCTTGTTTGGCTCCTGAGAAAGTAACCTTTGCTGTAGTACCGACGTTCTCTTACTTTGAGTTCATACCACTTTATTATAGACAGAAACAAGATTTCAGCTCAGTAGCTGATCATGATTTCATGGAAGACGAGCCAATCCCACTATCCCAGGTTAAAGTTGGCCAAGAGTACGAAATAGCGCTCACAACTTTTACTGGGCTGTATAGGTGCAGACTAGGAGACGTGGTGGAAGTGGCAGGTTTTCACAACGGGACCCCAAAATTGAACTTTATATGCAGAAGAAAACTAATTCTAACCGTGAATATAGACAAGAACACAGAGAGAGACCTTCAAATAGTGGTAGAGAAAGGGTCACAGCTGCTAAACAAGGCAAAAGCTGAGCTTGTTGATTTTACAAGCCATGCAGATGTCTCAAACAACCCAGGTTGTTACGTTATTTTCTGGGAAATCAAAGGTGAGGCCGAGGATAAGGTACTTGAGGCATGCTGCAGGGAAATGGATGCTGCTTTTGTTGACCATGGCTATGTGGTCGCAAGGAAAACAAGTTCAATAGGGCCTTTGTTGCTTTGCATTGTAGAGAGAGGGACTTTTAAAAAGATTTTGGATTATTTTGTGGAGAATGGGGCAGCACTGGGCCAGTTCAAGACCCCTAGGTGCACTAACAACCCGGTCCTCCTCAAAATTCTTAGTGCATGCACCATTAAAACATTTCGCAGCACTGCTTATATATAG 1962 0.4322 MVGSVPCLAFFYLLALWKLTPTNTKIYSFLFATLANAPARSSTINNPSSMEPPVLSFNSNDTTNNGNCTTDFDIITWFEDVSKNAGSVQTQTLCKILKQNYGVEYLKTWLGSYNISEMDACALESLFTSVVPLASHADFEPYIQKIADGDTGPILTQQPITTLSLSSGTTEGRQKFVPFTRHSAQTTLQTITLAAAYRSRVYPTREGGRILEFIYSSNQFKTKGGLKVGTATTHYYASEEFKTKQEKTKAFTCSPYEVISGGDYKQSTYCHLLLGLFFSDHVEFISSAFAYGIVQAFCTFEEVWRDLCNDIRDGTLSSRIMLPQMREAVLGTITSNPSLASKLEEACLELEVVDWFGLVPKLWPNAKYLYSIMTGSMQPYLKKLRHYANGVPLISADYGSTESWIGVNVDPCLAPEKVTFAVVPTFSYFEFIPLYYRQKQDFSSVADHDFMEDEPIPLSQVKVGQEYEIALTTFTGLYRCRLGDVVEVAGFHNGTPKLNFICRRKLILTVNIDKNTERDLQIVVEKGSQLLNKAKAELVDFTSHADVSNNPGCYVIFWEIKGEAEDKVLEACCREMDAAFVDHGYVVARKTSSIGPLLLCIVERGTFKKILDYFVENGAALGQFKTPRCTNNPVLLKILSACTIKTFRSTAYI* 654
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Gso12g1713 653 Pfam GH3 auxin-responsive promoter 77 632 IPR004993 -
Gso12g1713 653 PANTHER GH3 DOMAIN-CONTAINING PROTEIN 69 652 IPR004993 -
Gso12g1713 653 PANTHER INDOLE-3-ACETIC ACID-AMIDO SYNTHETASE GH3.10 69 652 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Gso12g1713 Gso-Chr12 40723088 40727750 Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Gso12g1713 73 650 EF-hand Containing Proteins AT1G23160 34.506 9.26e-115 354
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Gso12g1713 K14487 - gmx:100814683 1296.57
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Gso12g1713 12 40723088 40727750 Gso11g3152 11 47386083 47390956 GST
Gso12g1713 12 40723088 40727750 Gso12g0892 12 10069324 10074757 PCT
Gso12g1713 12 40723088 40727750 Gso6g2433 6 46002490 46007558 PCT
Gso12g0892 12 10069324 10074757 Gso12g1713 12 40723088 40727750 PCT
Gso6g2433 6 46002490 46007558 Gso12g1713 12 40723088 40727750 PCT