Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Gso12g0892 ATGCCGCAGCACCAACCAACTCTAATGGAACCTGTTCTCAGCTACAACAATAGCACCAACAATGGAAATGGCAACAGTGACTATGATATCATAAGCTGGTTTGAGGATGTATCTCAGAACGCTGGTTTTGTTCAGACTCAGTTGCTGTTCCAGATTCTCAAGCAAAACTATGGGGTTGAATATCTCAAGAAATGGTTGGGGAGCTACAACATCCTTGAGATGGATGCATGTGCATTGGAATCCCTTTTCTCTTCTGTGGTTCCCCTTGCCTCACATGCTGATTTTGAGCCATTTATCCAACGGATTGCAGATGGGGACACAGCTCCTTTACTCACTCAACAACCCATAACCACTCTTTCCTTAAGCAGTTCTGGAACCACAGAGGGGAGGCAGAAGTTCGTACCCTTTACCCGCCATAGTGCACAAACCACACTTCAAATATTCACCTTAGCTGCAGCATATAGATCAAGGATTTATCCAATAAGGCAAGGTGGAAGGATTCTTGAATTCATATACAGCAGCAACAGGTTCAAAACAAAAGGAGGATTAACAGTAGGAACCGCCACAACACACTACTATGCTAGTGAAGAATTCAATATCAAGCAGCACAAGACCAAGTCATTTACTTGCAGCCCTCAAGAAGTGATTTCTGGGGGAGACTATAAGCAATCCACATATTGCCACCTCCTTCTTGGCCTATTCTTCTCTGACCAAGTGGAGTTTATAACCTCAGCTTTTATCTACAGCATGGTGCAAGCTTTCACCACTTTTGAGGAACTTTGGAGAGAAATTTGCAATGACATAAGAGATGGAACTCTGAGCTCAAGGATCAAGTCACCCAAAATGAGAAAAGCTGTTTTGGATATCATCTCTCCAAATCCAAATTTGGCCGCAAAGTTGGAAGATGCTTGCAAGGGGCTAGAAGTAGTGGATTGGTTTGGTTTGATTCCAAAACTTTGGCCAAATGCAAAGTATGTGTATTCCATAATGACAGGGTCCATGCAACCATATTTGAAAAAACTTAGGCACTATGCAAATGGGTTGCCTTTGGTTAGTGCTGACTATGGCTCAACTGAGAGCTGGATAGGGGTTAATGTTGACCCTAGTTTGCCACCAGAAGATGTAACATTTGCTGTGGTTCCCACTTTCTCTTACTTTGAGTTCATACCACTCCACAGGAATGAAAAAAATTTCAGCTCAGGAGGTGATGATTTCATTGAAGACAAGCCTATTCCACTGTCTCAGATCAAAGTTGGACAAGAGTATGAAGTAGTCCTCACAACTTTCACCGGACTGTACAGGTGCAGGTTAGGGGATGTGGTGGAAGTGGCAGGCTTCCACAATGGGACCCCAAAGTTGAACTTTGTGTGCAGAAGAAAGCTAATTCTGACTATAAACATAGACAAGAACACAGAAAAGGACCTTCAGCTAGTGGTAGAGAGAGGGTCCCATATTCTGAACATGACAAGTAGAGGCGAGCTAGTTGATTTCACAAGCTACGCGGATGTCTCAAAGCAACCGGGGCACTACGTGATTTACTGGGAGATCAAAGGGGAGGTTGAGGACAAGATACTTGGCGCATGCTGCAACGAAATGGACAAGTCTTTTGCGGATCATGGCTATGTGGTCTCAAGGAAAACCAACTCGATAGGGCCCTTGGAGCTTTGCGTTTTGGAGAGTGGGACTTTCAAGAAGATTTTGGACAGCTTCATAGCTAATGGGGCAGCACTTAGCCAATTCAAGACCCCCAGGTGCACCAATAATCATGTCCTCCTCAAAATTCTTAACACGTGCACCACCAAAAAGTTCCGGAGCACTGCTTACAACAGTTCAATGGAACAATGA 1845 0.4412 MPQHQPTLMEPVLSYNNSTNNGNGNSDYDIISWFEDVSQNAGFVQTQLLFQILKQNYGVEYLKKWLGSYNILEMDACALESLFSSVVPLASHADFEPFIQRIADGDTAPLLTQQPITTLSLSSSGTTEGRQKFVPFTRHSAQTTLQIFTLAAAYRSRIYPIRQGGRILEFIYSSNRFKTKGGLTVGTATTHYYASEEFNIKQHKTKSFTCSPQEVISGGDYKQSTYCHLLLGLFFSDQVEFITSAFIYSMVQAFTTFEELWREICNDIRDGTLSSRIKSPKMRKAVLDIISPNPNLAAKLEDACKGLEVVDWFGLIPKLWPNAKYVYSIMTGSMQPYLKKLRHYANGLPLVSADYGSTESWIGVNVDPSLPPEDVTFAVVPTFSYFEFIPLHRNEKNFSSGGDDFIEDKPIPLSQIKVGQEYEVVLTTFTGLYRCRLGDVVEVAGFHNGTPKLNFVCRRKLILTINIDKNTEKDLQLVVERGSHILNMTSRGELVDFTSYADVSKQPGHYVIYWEIKGEVEDKILGACCNEMDKSFADHGYVVSRKTNSIGPLELCVLESGTFKKILDSFIANGAALSQFKTPRCTNNHVLLKILNTCTTKKFRSTAYNSSMEQ* 615
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Gso12g0892 614 PANTHER INDOLE-3-ACETIC ACID-AMIDO SYNTHETASE GH3.10 25 609 - -
Gso12g0892 614 PANTHER GH3 DOMAIN-CONTAINING PROTEIN 25 609 IPR004993 -
Gso12g0892 614 Pfam GH3 auxin-responsive promoter 33 588 IPR004993 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Gso12g0892 Gso-Chr12 10069324 10074757 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Gso12g0892 29 606 EF-hand Containing Proteins AT1G23160 35.750 2.51e-116 357
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Gso12g0892 K14487 - gmx:100792358 1230.7
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Gso12g0892 12 10069324 10074757 Gso12g0892 12 10069324 10074757 ECH
Gso12g0892 12 10069324 10074757 Gso6g2433 6 46002490 46007558 GST
Gso12g1713 12 40723088 40727750 Gso12g0892 12 10069324 10074757 PCT
Gso11g3152 11 47386083 47390956 Gso12g0892 12 10069324 10074757 PCT
Gso12g0892 12 10069324 10074757 Gso12g1713 12 40723088 40727750 PCT
Gso12g0892 12 10069324 10074757 Gso11g3152 11 47386083 47390956 PCT