Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Gso12g1669 ATGTTTGGTTCCACACTCCGAAACTCAATAGCTATTAATTCTCTAGCCATGCCTAAAGCTACAAAGCACTTATGCCACGATCCAAAGGATAATCTTGATGATGATGATGATGGTAGTAACACTAGTAACAACAATAAGAGCGCACTCGAATACATTGAAGAGGTCACAAGCAACGCTGATGTAATTCAAGAAAAGGTTCTTGCCCAGATCCTTTCTCGTAGTGCACACGCTGAATACCTCCAACGCCATGGCCTAGATGGGCGCACTGACAGAAACACTTTCAAGAAGATCATGCCCGTGGTCACTTACGAGGATTTGAAGCCATATATTGATCGTATAGCCAACGGTGATACCTCTCCAATTTTATGTTCCAAACCCATATCAGAGTTCCTCACCAGCTCTGGGACTTCTGGTGGGGAGAGAAAATTGATGCCAACCATAGAAGAGGAGCTAGAGAGGAGATCAATGCTTTATAGCCTCTTGATGCCGGTGATGGATCAGTTTGTGCCCGCTTTGGACAAAGGCAAAGGCATGTACTTTTTGTTCACAAAATCAGAAGCCAAGACCCCAGGTGGACTCCTTGCTCGTCCAGTTTTGACCAGCTATTACAAAAGCTCCCATTTCAAGCACCGCAAACACGATCCCTACACAAACTACACAAGCCCCAATGAAACCATTCTCTGCCCTGACTCTTACCAAAGCATGTACTCTCAGTTGCTCTGCGGCCTTTGCCAAAACGAGGAAGTTCTTCGAGTTGGGGCAGTCTTCGCATCAGGTTTCATTCGTGCCCTTAAGTTCCTCGAAAAGCACTTCGTGTCTTTGTGCAATGACATAAGAAAGGGTACCTTAGACGCCAAAATCAACGACCCTTTAGTGAGAGAGGCCGTTATGAAAGTACTTAAACCAAATCCCACGCTTGCGGATTTCGTAGAAGCTGAGTGCATGAAAGGGTCGTGGAAGGGAATTGTTACTAGGATATGGCCTAACACTAAGTATGTTGATGTTATTGTCACGGGAACTATGTCTCAGTACATTCCCATTTTGGATTATTATAGCAATGGTCTCCCTCTTGTGTGCACCATGTATGCTTCTTCTGAGTGCTATTTTGGCCTCAATTTGAACCCCTTGTGTGACCCAAGTGAGGTAGCTTACACCCTCATTCCCACCATGGCATACTTTGAGTTCTTGCCCCTCGATGAGATCAACGGACATACTAATTCAGTTTCTCACCTAGTGCAAGAACAATTGTTGGATCTTGCAGATGTGAAGCTGGGTCAAGAGTATGAGCTTGTGGTCACCACTTATGCAGGACTATATAGGTACCAGGTTGGTGACATTCTCCGTGTAGCCGGATTCAAGAACAAGGCTCCACAATTCAACTTCGTGTGTCGAAAAAACGTTGTTCTGAGCATTGACTCCGACAAAACCGACGAAGTTGAGCTACAAAATGCTGTGAAGAGTGGAGCCGACCATCTTGCTCAATTTGGTGCATCTCTAACAGAATACACAAGCTGTGTGGACACATCAACCATCCCTGGCCACTACGTTCTTTACTGGGAAATTAGCACCAATGGCCATACCCCAACAATTCCTTCTTCCGTTTTTGGTCATTGTTGCCTTGCAATTGAGGAATCACTAAACAGCGTGTATCGCCAAGGCAGAGTATCAGAGTCTATTGGACCCTTGGAAATTAAGATAGTTGAGAATGGCACATTTGACAAGCTCATGGACTTTGCTCTTAGCCAGGGTGCGTCCATTAACCAATACAAGACTCCTCGATGTGTGACATATGCGCCCATTCTGGACCTTCTAAACTCTAACGTTGTGTCCAGTTACTTTAGCCCAAAATGCCCTAATTGGGTTCCTGGTCACAAGGACTGGTGCTCTCTTCATTGA 1896 0.4525 MFGSTLRNSIAINSLAMPKATKHLCHDPKDNLDDDDDGSNTSNNNKSALEYIEEVTSNADVIQEKVLAQILSRSAHAEYLQRHGLDGRTDRNTFKKIMPVVTYEDLKPYIDRIANGDTSPILCSKPISEFLTSSGTSGGERKLMPTIEEELERRSMLYSLLMPVMDQFVPALDKGKGMYFLFTKSEAKTPGGLLARPVLTSYYKSSHFKHRKHDPYTNYTSPNETILCPDSYQSMYSQLLCGLCQNEEVLRVGAVFASGFIRALKFLEKHFVSLCNDIRKGTLDAKINDPLVREAVMKVLKPNPTLADFVEAECMKGSWKGIVTRIWPNTKYVDVIVTGTMSQYIPILDYYSNGLPLVCTMYASSECYFGLNLNPLCDPSEVAYTLIPTMAYFEFLPLDEINGHTNSVSHLVQEQLLDLADVKLGQEYELVVTTYAGLYRYQVGDILRVAGFKNKAPQFNFVCRKNVVLSIDSDKTDEVELQNAVKSGADHLAQFGASLTEYTSCVDTSTIPGHYVLYWEISTNGHTPTIPSSVFGHCCLAIEESLNSVYRQGRVSESIGPLEIKIVENGTFDKLMDFALSQGASINQYKTPRCVTYAPILDLLNSNVVSSYFSPKCPNWVPGHKDWCSLH* 632
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Gso12g1669 631 Pfam GH3 auxin-responsive promoter 52 596 IPR004993 -
Gso12g1669 631 MobiDBLite consensus disorder prediction 24 40 - -
Gso12g1669 631 MobiDBLite consensus disorder prediction 24 45 - -
Gso12g1669 631 PANTHER INDOLE-3-ACETIC ACID-AMIDO SYNTHETASE 37 627 - -
Gso12g1669 631 PANTHER GH3 DOMAIN-CONTAINING PROTEIN 37 627 IPR004993 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Gso12g1669 Gso-Chr12 40283481 40287782 Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Gso12g1669 39 614 EF-hand Containing Proteins AT1G23160 49.573 0.0 568
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Gso12g1669 K14487 - gmx:100806653 1254.58
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Gso12g1669 12 40283481 40287782 Gso11g3192 11 47729366 47733833 GST
Gso12g1669 12 40283481 40287782 Gso12g0848 12 9268131 9272119 PCT
Gso12g1669 12 40283481 40287782 Gso6g2474 6 46453422 46457561 PCT
Gso12g0848 12 9268131 9272119 Gso12g1669 12 40283481 40287782 PCT
Gso6g2474 6 46453422 46457561 Gso12g1669 12 40283481 40287782 PCT