Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Gso12g1607 ATGGATCGCCGCATCTACGGCGTCTCCGGCCACCGCATCTTCCTCTCCCTTCTCTTCCTTGTCTCTGTTTTCCCACAAGCGTTAACGCTGTCGCCGTCACCGACGGCTCAGATTAACTCAAACTCAATCCTCGTCGCTCTTCTGGACTCGCATTACACGGAACTCGCGGAGCTTGTCGAAAAAGCCATGTTGTTACAGAAACTAGAAGACACTGTCGCCACTCACAACATAACAATCTTCGCTCCGACCAACGAAGCCTTAGACCGCAACCTCGACCCCGATTTCAAGCGCTTTCTTCTCGAACCCGCCAATCTTCACTCCCTCCAGACGCTCCTCCTCTCTCACATCACCCCCGCGCAAATAGGATCCAAAACCCTAACCCGCCACGTCACCTCTCTTTCCGACCACAACCTCAAGCTCTCCGAAAATCTCACCACCGTCGACCAAGCCAAGGTTACCCACCCGGATGTGGTGACCCGACCCGACGGCGTCATCCACGGCATCGACCGCCTCCTCCTCCCCCGCTCCGTCGAGGACGACTTCAACCGCCGCCGCAGCCTCCGCTCCATCACCGCCGTCAAACCCGAACCCTCGCCGGAAATCGACCCGAGAACCCACCGTCTAAAGAAACGTCCCCCGCCGGTGAAACCCGGTTCCTCCCCGGAACTTCCGATTTACGACGCGATGGCTCCGGGACCCGCCCTGGCCCCGGCGCCGGCGCCGGGGCCAGGCGGCTCGCACCACCACTTCAACGGAGAAAGACAAGTCGAGGACTTCATCCACACGCTCCTCCACTACGGCGGGTACAACGAGATGGCGGACATTCTCGTAAACCTAACGTCGTTGGCCGTTGAAATGGGTCGTTTAGTTTCGGAGGGTTACGTGCTCACCGTTTTGGCCCCAAACGACGAAGCGATGGCGAAGTTGACAACGGAGCAATTAAGCGAACCGGGGGCGCCGGAGCAGATAATGTACTATCACATAATACCGGAGTACCAGACCGAAGAGAGCATGTACAATGCGGTTAGAAGGTTCGGGAAGGTTCGCTACGATACCCTACGGTTGCCGCATAAGGTGGTGGCGCAAGAAGCTGATGGGTCCGTTAAATTCGGGCACGGGGACGGGTCGGCTTATTTGTTCGACCCGGATATTTACACCGATGGACGGATCTCGGTTCAGGGGATTGATGGGGTTTTGTTTCCGACGGTGGAGGTGGAGGGGGCGGAGCGGGTTAGACCGGTTACCCGGACCGGTCAGAACGGTGCGAAAGTTGTTGTCAAGCACAGGAGAGGAAAATTACTGGAAACAGCATGCTGGATGCTTGGAACTTTTGGACAGCATTCTAGATTCGCCTCTTGTCAATGA 1365 0.5714 MDRRIYGVSGHRIFLSLLFLVSVFPQALTLSPSPTAQINSNSILVALLDSHYTELAELVEKAMLLQKLEDTVATHNITIFAPTNEALDRNLDPDFKRFLLEPANLHSLQTLLLSHITPAQIGSKTLTRHVTSLSDHNLKLSENLTTVDQAKVTHPDVVTRPDGVIHGIDRLLLPRSVEDDFNRRRSLRSITAVKPEPSPEIDPRTHRLKKRPPPVKPGSSPELPIYDAMAPGPALAPAPAPGPGGSHHHFNGERQVEDFIHTLLHYGGYNEMADILVNLTSLAVEMGRLVSEGYVLTVLAPNDEAMAKLTTEQLSEPGAPEQIMYYHIIPEYQTEESMYNAVRRFGKVRYDTLRLPHKVVAQEADGSVKFGHGDGSAYLFDPDIYTDGRISVQGIDGVLFPTVEVEGAERVRPVTRTGQNGAKVVVKHRRGKLLETACWMLGTFGQHSRFASCQ* 455
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Gso12g1607 454 Pfam Fasciclin domain 51 174 IPR000782 -
Gso12g1607 454 Pfam Fasciclin domain 295 401 IPR000782 -
Gso12g1607 454 ProSiteProfiles FAS1/BIgH3 domain profile. 256 384 IPR000782 -
Gso12g1607 454 PANTHER FASCICLIN-LIKE ARABINOGALACTAN PROTEIN 16 1 454 - -
Gso12g1607 454 Gene3D FAS1 domain 26 175 IPR036378 -
Gso12g1607 454 SUPERFAMILY FAS1 domain 39 175 IPR036378 -
Gso12g1607 454 PANTHER FASCICLIN-LIKE ARABINOGALACTAN PROTEIN 16 1 454 IPR044654 -
Gso12g1607 454 MobiDBLite consensus disorder prediction 188 251 - -
Gso12g1607 454 ProSiteProfiles FAS1/BIgH3 domain profile. 39 172 IPR000782 -
Gso12g1607 454 SUPERFAMILY FAS1 domain 235 401 IPR036378 -
Gso12g1607 454 Gene3D FAS1 domain 279 401 IPR036378 -
Gso12g1607 454 SMART fasc_3 297 402 IPR000782 -
Gso12g1607 454 SMART fasc_3 78 175 IPR000782 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Gso12g1607 Gso-Chr12 39635947 39639703 Wgd
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Gso12g1607 - - gmx:100782264 867.84
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Gso12g1607 12 39635947 39639703 Gso11g3247 11 48253086 48256528 GST
Gso12g1607 12 39635947 39639703 Gso12g0785 12 8162326 8166774 PCT
Gso12g1607 12 39635947 39639703 Gso6g2537 6 47093505 47098070 PCT
Gso12g0785 12 8162326 8166774 Gso12g1607 12 39635947 39639703 PCT
Gso6g2537 6 47093505 47098070 Gso12g1607 12 39635947 39639703 PCT