Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Gso11g3247 ATGGATCGCCACAGCATCCCCGGCGTCTCCAACCTCTGCATCTTCCTCTTCCTTGTTTCTCTTTTCCCACAAGCATTAACGCTGCGGGTCTCTTCTCCGTCGTCACCGACGGGTCAGATTAACTCAAATTCAATCCTCGTGGCTCTTCTGGACTCGCATTACACGGAACTCGCGGAGCTCGTTGAAAAAGCCATGCTGTTACAGAAACTAGAAGACACTGTCGCCACTCACAACATAACAATCTTCGCTCCGACCAACGAAGCCTTATACCGCAACCTCGACCCCGATTTCAAGCGCTTCCTCCTCCAACCCGCCAATCTTCACTCCCTCCAGACGCTCCTCCTCTCTCACATCACCCCCGCCCTAATCGGATCCCAAACCCTAACACGCCACGTCACCACTCTCTCCGACCACAACCTCAAACTCTCCGAAAACCTCACCACCGTCGACCAAGCCAGAGTCACCCACCCGAATGTTGTGACCCGACCCGACGGCGTCATCCACGGCATCGACCGCCTCCTCCTCCCCCGTTCCGTCGAGGACGACTTCAACCGCCGCCGCAGCCTCCGCTCCATCTCCGCCGTCAAACCCGAACCTGCCCCGGAGGTCGACCCGAGAACCCACCGTCTCAAAAAACCCCCCCCACCGGCGAAACCTGGTTCTCTTCCAGAACTTCCGATCTACGACGCGATGGCTCCGGGACCCTCCCTGGCCCCGGCGCCGGCGCCGGGGCCAGGCGGCCCGCACCACCACTTCAACGGCGAAAGACAAGTGAAGGACTTCATCCACACGCTCCTCCACTACGGCGGGTACAACGAGATGGCAGACATTCTCGTAAACCTAACGTCGTTGGACGTTGAAATGGGTCGTTTAGTCTCAGAGGGTTACGTGCTCACCGTTTTGGCACCAAACGACGAAGCGATGGCGAAGTTGACGACGGAGCAGTTAAGCGAACCGGGGGCACCGGAGCAGATAATGTACTATCACATAATCCCGGAGTACCAGACCGAAGAGAGTATGTACAATGCCGTTAGAAGGTTCGGGAAGGTTCGTTACGATACCCTACGGTTGCCGCATAAGGTGGTTGCTCAAGAAGCTGATGGGTCCGTTAAATTCGGGCACGGGGACGGGTCGGCTTATTTGTTCGACCCGGATATTTACACAGACGGGCGGATCTCGGTTCAGGGGATTGATGGGGTTTTGTTTCCGGCGGCGGAGGAGGATGCGGAGCGGGTTAGACCCGTTACCCAAACGGGTCAGAACGCTACGAAGCTTGTTGTCAAGCACAGGAGAGGAAAATTGCTGGAAACAGCATGCTGGATGCTTGGAACCTTTGGACAGCATTCTAGATTCGCCTCTTGTCAATGA 1368 0.5665 MDRHSIPGVSNLCIFLFLVSLFPQALTLRVSSPSSPTGQINSNSILVALLDSHYTELAELVEKAMLLQKLEDTVATHNITIFAPTNEALYRNLDPDFKRFLLQPANLHSLQTLLLSHITPALIGSQTLTRHVTTLSDHNLKLSENLTTVDQARVTHPNVVTRPDGVIHGIDRLLLPRSVEDDFNRRRSLRSISAVKPEPAPEVDPRTHRLKKPPPPAKPGSLPELPIYDAMAPGPSLAPAPAPGPGGPHHHFNGERQVKDFIHTLLHYGGYNEMADILVNLTSLDVEMGRLVSEGYVLTVLAPNDEAMAKLTTEQLSEPGAPEQIMYYHIIPEYQTEESMYNAVRRFGKVRYDTLRLPHKVVAQEADGSVKFGHGDGSAYLFDPDIYTDGRISVQGIDGVLFPAAEEDAERVRPVTQTGQNATKLVVKHRRGKLLETACWMLGTFGQHSRFASCQ* 456
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Gso11g3247 455 Gene3D FAS1 domain 27 177 IPR036378 -
Gso11g3247 455 PANTHER FASCICLIN-LIKE ARABINOGALACTAN PROTEIN 16 4 455 - -
Gso11g3247 455 SUPERFAMILY FAS1 domain 42 177 IPR036378 -
Gso11g3247 455 Pfam Fasciclin domain 297 403 IPR000782 -
Gso11g3247 455 Pfam Fasciclin domain 53 176 IPR000782 -
Gso11g3247 455 ProSiteProfiles FAS1/BIgH3 domain profile. 258 386 IPR000782 -
Gso11g3247 455 Gene3D FAS1 domain 282 404 IPR036378 -
Gso11g3247 455 PANTHER FASCICLIN-LIKE ARABINOGALACTAN PROTEIN 16 4 455 IPR044654 -
Gso11g3247 455 SUPERFAMILY FAS1 domain 237 403 IPR036378 -
Gso11g3247 455 MobiDBLite consensus disorder prediction 190 254 - -
Gso11g3247 455 ProSiteProfiles FAS1/BIgH3 domain profile. 41 174 IPR000782 -
Gso11g3247 455 SMART fasc_3 80 177 IPR000782 -
Gso11g3247 455 SMART fasc_3 299 404 IPR000782 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Gso11g3247 Gso-Chr11 48253086 48256528 Dispersed/Wgd
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Gso11g3247 - - gmx:100815434 868.226
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Gso12g1607 12 39635947 39639703 Gso11g3247 11 48253086 48256528 GST
Gso11g3247 11 48253086 48256528 Gso12g0785 12 8162326 8166774 PCT
Gso11g3247 11 48253086 48256528 Gso6g2537 6 47093505 47098070 PCT
Gso12g0785 12 8162326 8166774 Gso11g3247 11 48253086 48256528 PCT
Gso6g2537 6 47093505 47098070 Gso11g3247 11 48253086 48256528 PCT