Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Gso12g0785 ATGTATTTTCGCATCTATGGCGTCACGATCCTCCTCTTCCTCCTCCCAACCCTCACATTCTCCCTCTCGCAGGGTCAGATAAACTCAAACTCAATCCTCGTCGCTCTGCTGGACTCGCATTACACCGAAGTAGCTGAGCTTGTGGAAAAAGCCATGCTTTTGCAGACGCTGGAGAACACCGTGATGAACAACAACATCACAATCTTCGCTCCCAGAAATGAAGCCCTCGAACGCGATCTCGACCCTGATTTCAAGCGCTTCCTCCTCGAACCCCGCAATCTCCAATCCCTCCAAACTCTCCTTTTGTCCCACATCGTCCCCAAAAGAATCATCAAACCCGAATACCTAACCGGGACGGGCAAGCCGGGTAGGCCAAATAACCCGACCCGGCACCGAACGCTAGCTCCGAACCACCACCTCACTCTCCAGTCCCTGAATTTGACTCACTGGAATGTCGATTCTTCCCGGGTCATGAACCCGGATTCAGTGACCCGACCCGACGGAGTGATCCACGGCATCGACACTTTACTAATCCCTCGCTCCGTCCAAGACGAATTCAACCGTCGCCGGAATCTGATCTCCATCGCGGCCGTGAAACCCGAACCCTCCCCGGAGGTCGACCCGCGAACCCACAGGTTAAAAAAACCAGCGCCGGCATCGCCGGCGGGTTCTCCGCCGGCGCTCCCGATCTACGACGCGATGGCGCCGGGGCCCTCGCTAGCTCCGGCGCCAGCGCCGGGGCCTGGGGGGCCCCGCCACCACTTCAATGGGGAGAAGCAAGTAAAAGACTTCATCCACACGCTTCTCCATTACGGCGGTTACAACGAGATGGCGGATATTCTGGTAAACTTAACGTCACTGGCGACGGAGATGGGACGGTTGGTTTCGGAGGGTTACGTGTTGACGGTGTTGGCTCCAAACGACGAGGCCATGGCGAAGTTAACCACGGACCAGTTAAGTGAACCGGGTTCGCCCGAACAGATTATGTATTATCATTTGATTCCTGAGTATCAGACCGAGGAGAGCATGTACAATGCCGTTAGAAGGTTCGGGAAGGTCCGTTACGACACCTTACGGTTGCCGCACAAGGTGACGGCGCAGGAGGCTGACGGCTCCGTTAAGTTCGGGCACGGGGACACTTCCGCGTACTTGTTCGACCCCGATATTTACACGGATGGACGGATCTCCGTTCAGGGAATTGACGGCGTTCTCTTTCCGCCTCAGGAGGAAGAGGCTGGGCCCGTTACCCGATCCAAGCCCGCTAAGGTCGTCGTTAAGCAAAGAAGAGGTAAATTGTTGGAAACAGCATGTTGGATGCTTGGAAGCTTTGGACAGAACTCTAGATTCATCTCTTGTCAATAA 1362 0.5536 MYFRIYGVTILLFLLPTLTFSLSQGQINSNSILVALLDSHYTEVAELVEKAMLLQTLENTVMNNNITIFAPRNEALERDLDPDFKRFLLEPRNLQSLQTLLLSHIVPKRIIKPEYLTGTGKPGRPNNPTRHRTLAPNHHLTLQSLNLTHWNVDSSRVMNPDSVTRPDGVIHGIDTLLIPRSVQDEFNRRRNLISIAAVKPEPSPEVDPRTHRLKKPAPASPAGSPPALPIYDAMAPGPSLAPAPAPGPGGPRHHFNGEKQVKDFIHTLLHYGGYNEMADILVNLTSLATEMGRLVSEGYVLTVLAPNDEAMAKLTTDQLSEPGSPEQIMYYHLIPEYQTEESMYNAVRRFGKVRYDTLRLPHKVTAQEADGSVKFGHGDTSAYLFDPDIYTDGRISVQGIDGVLFPPQEEEAGPVTRSKPAKVVVKQRRGKLLETACWMLGSFGQNSRFISCQ* 454
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Gso12g0785 453 MobiDBLite consensus disorder prediction 200 255 - -
Gso12g0785 453 Pfam Fasciclin domain 286 406 IPR000782 -
Gso12g0785 453 Pfam Fasciclin domain 40 179 IPR000782 -
Gso12g0785 453 PANTHER FASCICLIN-LIKE ARABINOGALACTAN PROTEIN 16 1 453 - -
Gso12g0785 453 ProSiteProfiles FAS1/BIgH3 domain profile. 28 177 IPR000782 -
Gso12g0785 453 Gene3D FAS1 domain 280 407 IPR036378 -
Gso12g0785 453 ProSiteProfiles FAS1/BIgH3 domain profile. 261 404 IPR000782 -
Gso12g0785 453 SUPERFAMILY FAS1 domain 240 407 IPR036378 -
Gso12g0785 453 Gene3D FAS1 domain 35 182 IPR036378 -
Gso12g0785 453 PANTHER FASCICLIN-LIKE ARABINOGALACTAN PROTEIN 16 1 453 IPR044654 -
Gso12g0785 453 SMART fasc_3 302 407 IPR000782 -
Gso12g0785 453 SMART fasc_3 67 180 IPR000782 -
Gso12g0785 453 SUPERFAMILY FAS1 domain 31 180 IPR036378 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Gso12g0785 Gso-Chr12 8162326 8166774 Dispersed/Wgd
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Gso12g0785 - - gmx:100790599 863.218
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Gso12g0785 12 8162326 8166774 Gso6g2537 6 47093505 47098070 GST
Gso12g1607 12 39635947 39639703 Gso12g0785 12 8162326 8166774 PCT
Gso11g3247 11 48253086 48256528 Gso12g0785 12 8162326 8166774 PCT
Gso12g0785 12 8162326 8166774 Gso12g1607 12 39635947 39639703 PCT
Gso12g0785 12 8162326 8166774 Gso11g3247 11 48253086 48256528 PCT