Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Gso12g1561 ATGACCGAGGTCCTCCACTCCTCCCCACCTCGTTTTGTTGCTTCATCACCACCAACAAAGACAAGGACAACAACAACAACAACAACAACAAAGACAAGGACAACAACACCAACAACCTCTTCATTCTCTTCTCCCAATGCCTTTCTCCTCCGACCTCTCTTGGCGCTTCTTCTGACCCTTCTCAGGAAATCCTTCCAGCTTCCTCGCAAAAACATCGGCTCCATTATGGACATTGGCTCCCCAACGAACGTGCGCCATGTTGCGCATGTCACCTTTGATAGGTTCAATGGTTTCTTGGGCTTGCCTGTTGAGTTTGAACCTGAGGTCCCCAGAAGGCCTCCTAGTGCTAGTGCATCTGTTTTTGGAGTTTCAACAGAATCCATGCAGTTGTCGTATGACTCAAGAGGGAACAGTGTGCCAACAATACTGCTGTTGATGCAAAGGCATCTGTATGTTCAAGGAGGGTTGCAGGTGGAGGGGATTTTCAGAATTAACGCGGACAATGGTCAAGAGGAACATGTTAGGGATCAATTGAATTTGGGAGTGGTCCCAGAAGGCATTGATGTACATTGTTTGGCAGGGCTAATTAAGGCTTGGTTTAGGGAACTTCCTACAGGCATTCTAGATTCATTATCACCCGAGCAGGTAATGCAATGCCAGACTGAGGATGAATGTTCTGAACTAGTGAGACATCTACCTCATACTGAAGCTTCACTCTTGGACTGGGCCATCAATCTGATGGCTGATGTTGTCCTACATGAGCATGTTAATAAGATGAATGCGCGTAACATTGCCATGGTTTTTGCACCAAACATGACTCAGATGGCAGACCCTATATCTGCATTGATGTATGCAGTTCAAGTAATGAACTTCTTGAAGACACTTATATTAAGGACAGTGCGGGAAAGAAAGGATTCTGTGGTAGAATCATGTCCTAGATTTTATCTACAACCTTCTGTAGATAATGAAAACCGTAGAATTTTGGAGTCCTTCCGGCAAGATACTCCTGCAGAAAATGAAGAGGCTCAAGAAAACTTTGTTTTAGAGAAAACTGCCTTAGACCGTTCCCCTGAATCACTCCAAAACAACTCAACTGGAGGAGAACCTGGCAGTTTGACAAACTCTTCTGAGAATCTTGTTTGCAATGAGGATTTGTATTGTGAGTTTCCACCCGTAGGAAACATGGGGAAGAGTAAAACTGGCCAATCAAGTAAGTCAAATGCTAGAAAAGAGTCCAAAAAGACAAGAGGCAGCAACCTGTGA 1263 0.4458 MTEVLHSSPPRFVASSPPTKTRTTTTTTTTKTRTTTPTTSSFSSPNAFLLRPLLALLLTLLRKSFQLPRKNIGSIMDIGSPTNVRHVAHVTFDRFNGFLGLPVEFEPEVPRRPPSASASVFGVSTESMQLSYDSRGNSVPTILLLMQRHLYVQGGLQVEGIFRINADNGQEEHVRDQLNLGVVPEGIDVHCLAGLIKAWFRELPTGILDSLSPEQVMQCQTEDECSELVRHLPHTEASLLDWAINLMADVVLHEHVNKMNARNIAMVFAPNMTQMADPISALMYAVQVMNFLKTLILRTVRERKDSVVESCPRFYLQPSVDNENRRILESFRQDTPAENEEAQENFVLEKTALDRSPESLQNNSTGGEPGSLTNSSENLVCNEDLYCEFPPVGNMGKSKTGQSSKSNARKESKKTRGSNL* 421
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Gso12g1561 420 MobiDBLite consensus disorder prediction 12 43 - -
Gso12g1561 420 CDD CRIB 76 116 - -
Gso12g1561 420 ProSiteProfiles Rho GTPase-activating proteins domain profile. 123 304 IPR000198 GO:0007165
Gso12g1561 420 MobiDBLite consensus disorder prediction 391 420 - -
Gso12g1561 420 ProSiteProfiles CRIB domain profile. 78 91 IPR000095 -
Gso12g1561 420 MobiDBLite consensus disorder prediction 352 375 - -
Gso12g1561 420 MobiDBLite consensus disorder prediction 1 43 - -
Gso12g1561 420 SMART RhoGAP_3 137 300 IPR000198 GO:0007165
Gso12g1561 420 CDD RhoGAP 140 296 - -
Gso12g1561 420 SUPERFAMILY GTPase activation domain, GAP 118 297 IPR008936 GO:0007165
Gso12g1561 420 PANTHER RHO GTPASE-ACTIVATING PROTEIN 1 1 415 - -
Gso12g1561 420 MobiDBLite consensus disorder prediction 404 420 - -
Gso12g1561 420 SMART PBD_5 78 112 IPR000095 -
Gso12g1561 420 Gene3D CRIB domain 75 108 IPR036936 -
Gso12g1561 420 Pfam P21-Rho-binding domain 77 104 IPR000095 -
Gso12g1561 420 MobiDBLite consensus disorder prediction 355 375 - -
Gso12g1561 420 PANTHER MKIAA1688 PROTEIN 1 415 IPR044785 GO:0005096
Gso12g1561 420 Gene3D Rho GTPase activation protein 111 307 IPR008936 GO:0007165
Gso12g1561 420 Pfam RhoGAP domain 140 274 IPR000198 GO:0007165
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Gso12g1561 Gso-Chr12 39087261 39091428 Wgd
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Gso12g1561 - K20642 gmx:100776004 777.319
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Gso12g1561 12 39087261 39091428 Gso11g3287 11 48688211 48692203 GST
Gso12g1561 12 39087261 39091428 Gso12g0732 12 7406921 7411110 PCT
Gso12g1561 12 39087261 39091428 Gso11g1380 11 15727961 15732485 PCT
Gso12g0732 12 7406921 7411110 Gso12g1561 12 39087261 39091428 PCT
Gso11g1380 11 15727961 15732485 Gso12g1561 12 39087261 39091428 PCT