Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Gso11g3287 ATGACCGAGGTCCTCCACTCCTCATCCCCACCCCATTTTGTTGCTTCTTCATCACCACCAACAAAGACAAGGACAACAACCACTACAACAACAACCTCTTCATTCTCTTCTCACAATAATGCCTTTCTCCTCCGACCTCTCTTGGCTCTTCTTCTGACCCTTCTCAGGAAATCCTTCCAGCTTTCTCGCAGAAACATCTGCTCCATTATTATGAACATTGGTTCCCCAACTAACGTGCGCCATGTTGCGCATGTCACCTTTGATAGGTTCAACGGTTTCTTGGGCTTGCCTGTTGAGTTTGAACCTGAAGTCCCAAGAAGGCCTCCTAGTGCTAGTGCATCTGTTTTTGGAGTTTCAACAGAATCCATGCAGTTATCACATGACTCAAGAGGGAACAGTGTGCCAACAATTCTGCTGTTGATGCAAAAGCATTTGTATGTTCAAGGAGGTTTGCAGGTAGAGGGGATTTTCAGAATTAACGCGGACAATGGTCAAGAGGAACATGTTAGGGATCAATTGAATTTGGGAGTGGTCCCAGAAGGCATCGATGTACATTGTCTGGCAGGGCTAATTAAGGCTTGGTTTAGGGAACTTCCTGCAGGCATTCTGGATTCATTATCTCCGGAGCAAGTAATGCAATGCCAGACTGAGGAGGAATGTGCTGAACTAGTGAGACATCTACCTCATACTGAAGCTTCACTCTTGGACTGGGCCATCAATCTGATGGCTGATGTTGTCCAACATGAAAATGTAAATAAGATGAATGCGCATAACGTTGCCATGGTTTTTGCACCAAACATGACTCAGATGGCAGACCCTATATCTGCACTGATGTATGCAGTTCAAGTAATGAACTTCTTGAAGACTCTTATATTAAGGACAGTGCGGGAAAGAAAGGATTCTGTGGTAGAATCTTATCCTAGATTTTATTTGCAACCTTCTGTTGATAATGAAAACCATTCACTTTTGGAGTCCTTCCAGCAAGATACTCCAGCAGAAAATAAAGAGGCTCAAGAAAACTTTGTTTTAGAGAAAACTGCCTTAGATCGTTCCCCTGAATCACTCCAAAACAACTCCACTAGAGCAGAACCTGGCAGTTTGACAAACTCTTCGGAGAATCTTGTTTCCAATGAGGATTTGTATTGTGAGTTTCCACCCGTAGGAAACATGGGGAAGAGTAAAACTGGCCAATCAAGTAAGTCAAATGCTAGAAAAGAGTCCAAAAAGACAAGAGGCAGCAACCTGTGA 1248 0.4359 MTEVLHSSSPPHFVASSSPPTKTRTTTTTTTTSSFSSHNNAFLLRPLLALLLTLLRKSFQLSRRNICSIIMNIGSPTNVRHVAHVTFDRFNGFLGLPVEFEPEVPRRPPSASASVFGVSTESMQLSHDSRGNSVPTILLLMQKHLYVQGGLQVEGIFRINADNGQEEHVRDQLNLGVVPEGIDVHCLAGLIKAWFRELPAGILDSLSPEQVMQCQTEEECAELVRHLPHTEASLLDWAINLMADVVQHENVNKMNAHNVAMVFAPNMTQMADPISALMYAVQVMNFLKTLILRTVRERKDSVVESYPRFYLQPSVDNENHSLLESFQQDTPAENKEAQENFVLEKTALDRSPESLQNNSTRAEPGSLTNSSENLVSNEDLYCEFPPVGNMGKSKTGQSSKSNARKESKKTRGSNL* 416
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Gso11g3287 415 MobiDBLite consensus disorder prediction 1 35 - -
Gso11g3287 415 SMART RhoGAP_3 132 295 IPR000198 GO:0007165
Gso11g3287 415 PANTHER PAK-BOX/P21-RHO-BINDING DOMAIN RHO GTPASE ACTIVATING PROTEIN 1 399 - -
Gso11g3287 415 Pfam RhoGAP domain 135 269 IPR000198 GO:0007165
Gso11g3287 415 Pfam P21-Rho-binding domain 73 99 IPR000095 -
Gso11g3287 415 CDD CRIB 71 111 - -
Gso11g3287 415 SMART PBD_5 73 107 IPR000095 -
Gso11g3287 415 ProSiteProfiles Rho GTPase-activating proteins domain profile. 123 299 IPR000198 GO:0007165
Gso11g3287 415 PANTHER MKIAA1688 PROTEIN 1 399 IPR044785 GO:0005096
Gso11g3287 415 CDD RhoGAP 135 291 - -
Gso11g3287 415 SUPERFAMILY GTPase activation domain, GAP 113 292 IPR008936 GO:0007165
Gso11g3287 415 Gene3D Rho GTPase activation protein 106 302 IPR008936 GO:0007165
Gso11g3287 415 MobiDBLite consensus disorder prediction 399 415 - -
Gso11g3287 415 MobiDBLite consensus disorder prediction 350 377 - -
Gso11g3287 415 MobiDBLite consensus disorder prediction 346 415 - -
Gso11g3287 415 ProSiteProfiles CRIB domain profile. 73 86 IPR000095 -
Gso11g3287 415 Gene3D CRIB domain 70 103 IPR036936 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Gso11g3287 Gso-Chr11 48688211 48692203 Dispersed/Wgd
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Gso11g3287 - K20642 gmx:100798012 770.385
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Gso12g1561 12 39087261 39091428 Gso11g3287 11 48688211 48692203 GST
Gso11g3287 11 48688211 48692203 Gso12g0732 12 7406921 7411110 PCT
Gso11g3287 11 48688211 48692203 Gso11g1380 11 15727961 15732485 PCT
Gso12g0732 12 7406921 7411110 Gso11g3287 11 48688211 48692203 PCT
Gso11g1380 11 15727961 15732485 Gso11g3287 11 48688211 48692203 PCT