Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Gso11g1380 ATGACGGAGGTGCTTCATTTCTCATCCTCTTCGTCGCCAGCCACTTCTTCTTCCGATGGCATTCTCCAAGAACCACCACCACCTTCTTCTGTGAGCGTGGTGGTGGATGGGTTTTCTACGGTCACCGACTGTGACGCGCGCAGGGTCACGGTCACCGACAGAACGCACCAAGAGCTTTCTCTTCTGGCAATTCTTGTGACCCTTTTGAGGAAATCGCTGATTGCTTGCAACAAGAGCGACGAGGGACAGGGCGCCATGGAGATTGGGTGGCCCACTAACGTGCGCCACGTGGCGCATGTCACCTTCGACAGGTTCAATGGCTTCTTGGGCTTGCCTCGTGAGTTCGAGCCCGAAGTCTCCACAAGGCCTCCCAGTGCTAGTGCAACTGTTTTTGGAGTTTCAACAGAATCCATGCAGTTATCGTATGACACGAGAGGGAACAGTGTGCCAACCATACTGCTACTAATGCAAAGGCACTTGTATGCTCTCGGAGGGTTGCAGGCAGAGGGGATTTTCAGAATTAATGCAGATAATAGTCAAGAGGAGTATGTTAGGGATCAATTAAATAGGGGATTGGTCCCAGAAGATGTTGATATACATTGTTTGGCAGGACAAATTAAGGCTTGGTTTAGGGAACTGCCTACTGGTGTTCTGGATTCTTTATCACCAGAGCATGTAATGCAATGCCAGACTGAAGAGGATTGCGCTGAACTGGCCGGCCAGCTACCTCACACCGAAGCTTCCCTTTTGGACTGGGCTATTAATTTAATGGCTGATGTTGCCCAAGAGGAACACTTGAATAAGATGAATGCACGGAACATCGCCATGGTTTTTGCACCAAATATGACTCATATGGCAGATCCTTTGACTGCATTGATGTATGCAGTTCAAGTGATGAACTTCCTAAAGAATCTTATATTAAGGACACTGCGAGAGAGAAAGGATTGTGTGGTAGAATCGTCTCCTGGATTTTGTTTAGAGCCTTCTGATGAGAACGGGGACAGCAGTCTTCCGGAGTCCTGCCAGCAAGATGATGATGTTGCTGCTGAAAATGAAGAGGCCGGGGAAACCTTTGTTTCTGAGAAAACTGAATTAGAATGTTCGCCTGAGTCCCTCCAAAGCAAATATTCAACTGAAGGAGGATGTGGCAGTTTGATAGGCTCTCCTGAGAATCTGGTTTGTGAGGAGGACTTGTATTGTGAGTTTCCATCCAAAGGAAACATCGGGAAGAGTAAGAGTGTTCAATCAAGTAATTCCAGTTCTAAAAAGGGGTCCCAAAAAACCAGAGGCATGCTCCAACCTGTGATCCATGCAACAGTGGCTGCTGATAAAAAGGGTATTAGCAATCTGAGCCGCATAGATTCGAGATCAGAGCGGATAGAAGCCTGGCGGTGA 1395 0.4781 MTEVLHFSSSSSPATSSSDGILQEPPPPSSVSVVVDGFSTVTDCDARRVTVTDRTHQELSLLAILVTLLRKSLIACNKSDEGQGAMEIGWPTNVRHVAHVTFDRFNGFLGLPREFEPEVSTRPPSASATVFGVSTESMQLSYDTRGNSVPTILLLMQRHLYALGGLQAEGIFRINADNSQEEYVRDQLNRGLVPEDVDIHCLAGQIKAWFRELPTGVLDSLSPEHVMQCQTEEDCAELAGQLPHTEASLLDWAINLMADVAQEEHLNKMNARNIAMVFAPNMTHMADPLTALMYAVQVMNFLKNLILRTLRERKDCVVESSPGFCLEPSDENGDSSLPESCQQDDDVAAENEEAGETFVSEKTELECSPESLQSKYSTEGGCGSLIGSPENLVCEEDLYCEFPSKGNIGKSKSVQSSNSSSKKGSQKTRGMLQPVIHATVAADKKGISNLSRIDSRSERIEAWR* 465
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Gso11g1380 464 Pfam P21-Rho-binding domain 87 114 IPR000095 -
Gso11g1380 464 ProSiteProfiles CRIB domain profile. 88 101 IPR000095 -
Gso11g1380 464 MobiDBLite consensus disorder prediction 1 30 - -
Gso11g1380 464 MobiDBLite consensus disorder prediction 1 25 - -
Gso11g1380 464 Gene3D Rho GTPase activation protein 120 315 IPR008936 GO:0007165
Gso11g1380 464 ProSiteProfiles Rho GTPase-activating proteins domain profile. 133 314 IPR000198 GO:0007165
Gso11g1380 464 SMART PBD_5 88 122 IPR000095 -
Gso11g1380 464 Pfam RhoGAP domain 150 284 IPR000198 GO:0007165
Gso11g1380 464 MobiDBLite consensus disorder prediction 408 428 - -
Gso11g1380 464 MobiDBLite consensus disorder prediction 405 433 - -
Gso11g1380 464 CDD CRIB 86 126 - -
Gso11g1380 464 PANTHER MKIAA1688 PROTEIN 1 464 IPR044785 GO:0005096
Gso11g1380 464 PANTHER PAK-BOX/P21-RHO-BINDING DOMAIN RHO GTPASE ACTIVATING PROTEIN 1 464 - -
Gso11g1380 464 MobiDBLite consensus disorder prediction 327 365 - -
Gso11g1380 464 Gene3D CRIB domain 83 119 IPR036936 -
Gso11g1380 464 SUPERFAMILY GTPase activation domain, GAP 128 307 IPR008936 GO:0007165
Gso11g1380 464 CDD RhoGAP 150 306 - -
Gso11g1380 464 SMART RhoGAP_3 147 310 IPR000198 GO:0007165
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Gso11g1380 Gso-Chr11 15727961 15732485 Dispersed/Wgd
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Gso11g1380 - K20642 gmx:100784019 884.019
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Gso12g0732 12 7406921 7411110 Gso11g1380 11 15727961 15732485 GST
Gso12g1561 12 39087261 39091428 Gso11g1380 11 15727961 15732485 PCT
Gso11g3287 11 48688211 48692203 Gso11g1380 11 15727961 15732485 PCT
Gso11g1380 11 15727961 15732485 Gso12g1561 12 39087261 39091428 PCT
Gso11g1380 11 15727961 15732485 Gso11g3287 11 48688211 48692203 PCT