Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Gso12g0506 ATGGAAGACGGGCATAAGTTCCAGGAAGTTTCAAAGCCAAAATATGATTGCCTTTTATTTGATCTTGATGACACCCTTTATCCTTATAGTTCTGGAGTTTCAGTGCAAATAGCAAAAAATATTGATGAGTATATGATTCAAAAGCTTGGGGTGGAGGCTGCCAAAGTTGCTGAATTGAACTATTCATTATATAAGACTTATGGGACAACGATGGCTGGTCTAAGGGCAATTGGCTATGACTTTGACTATGATGACTTTAACAGTTTTGTTCATGGGAGATTGCCATATGATGTGCTGCTGAAACCAGACCCTGTTCTCAGGGGCATTTTGCAAAGCCTGCCTGTTAGGAAACTTATTTTTACTAATGCAGACTCGAAACATGCAATTCGAGCGCTTAAAACCCTTGGACTGGAGGACTGCTTTGAAAGTATTATAAGCTTTGACACTCTGAATCCCTCCAACAACACCAATCCTTCTCATAATAAAGATGGCAGTGAATCCCGATCAACCACTGCAGAAATTTTTGACTTTTGTGAGCACATACGCCGGGCGGAATCTGATATGGTGCTTCCAAGGACCCCAGTTGTCTGCAAACCCTTTGATGATGCATTTGGAAATGCTTTCAAGTTAGCAGATATTGACCCTCAAAGAGCATTGTTTTTTGATGACAGCATCCGCAATTTATTGACAGCCAAACGCTTGGGCCTCCACACAGTTGCGATTGGTACATCTGTTCGTACCACTGGAGTGGATCATGCATTAGAGAGTATTCATAATATCAAGGAGGCATTTCCTGAGCTTTGGGATGCTGAAGTGAAGCATGAATTTGTGCAATACAATGTTGGAATTGAAACATCGGTAAAAGCTTAG 870 0.4126 MEDGHKFQEVSKPKYDCLLFDLDDTLYPYSSGVSVQIAKNIDEYMIQKLGVEAAKVAELNYSLYKTYGTTMAGLRAIGYDFDYDDFNSFVHGRLPYDVLLKPDPVLRGILQSLPVRKLIFTNADSKHAIRALKTLGLEDCFESIISFDTLNPSNNTNPSHNKDGSESRSTTAEIFDFCEHIRRAESDMVLPRTPVVCKPFDDAFGNAFKLADIDPQRALFFDDSIRNLLTAKRLGLHTVAIGTSVRTTGVDHALESIHNIKEAFPELWDAEVKHEFVQYNVGIETSVKA* 290
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Gso12g0506 289 TIGRFAM HAD-SF-IA-v3: HAD hydrolase, family IA, variant 3 191 240 IPR006439 -
Gso12g0506 289 Gene3D - 6 100 - -
Gso12g0506 289 SFLD Haloacid Dehalogenase 11 269 - -
Gso12g0506 289 PANTHER HALOACID DEHALOGENASE-LIKE HYDROLASE 1 289 - -
Gso12g0506 289 TIGRFAM Pyr-5-nucltdase: pyrimidine 5'-nucleotidase 16 240 IPR010237 -
Gso12g0506 289 Gene3D - 105 276 IPR023214 -
Gso12g0506 289 SUPERFAMILY HAD-like 17 245 IPR036412 -
Gso12g0506 289 SFLD C1.5.3: 5'-Nucleotidase Like 11 269 IPR010237 -
Gso12g0506 289 PANTHER HALOACID DEHALOGENASE-LIKE HYDROLASE 1 289 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Gso12g0506 Gso-Chr12 4507574 4510930 Wgd
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Gso12g0506 K07025 - gmx:100807717 580.482
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Gso12g0506 12 4507574 4510930 Gso11g1169 11 10501262 10504926 GST
Gso15g0325 15 2921084 2923744 Gso12g0506 12 4507574 4510930 PCT
Gso11g3483 11 50730997 50733487 Gso12g0506 12 4507574 4510930 PCT
Gso12g0506 12 4507574 4510930 Gso15g0325 15 2921084 2923744 PCT
Gso12g0506 12 4507574 4510930 Gso11g3483 11 50730997 50733487 PCT