Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Gso12g0431 ATGGCTTCCACTAATGCTCTTCCTCCCACCGGCAACGGCCTCATCGTGAGCTTCGGCGAGATGCTCATCGACTTCGTTCCCACCGTCTCCGGGGTGTCCCTCGCGGAGGCTCCGGGATTCCTCAAGGCCCCCGGCGGCGCCCCCGCCAACGTTGCCATCGCCGTCGCGAGACTCGGCGGCAAAGCGGCGTTCGTCGGGAAGCTCGGCGACGACGAGTTCGGGCACATGCTGGCCGGAATCCTGAAGGAGAACGACGTGCGATCCGACGGGATCAACTTCGACAAGGGCGCGCGCACCGCGCTGGCGTTCGTGACCCTACGCGCCGACGGGGAGCGTGAGTTCATGTTCTACAGAAACCCCAGTGCCGACATGCTCCTCACGCCCGAAGATCTCAATCTCGAACTCATCAGATCCGCAAAAGTATTCCATTATGGATCGATAAGCTTGATCGTGGAGCCATGCAGATCAGCACACTTGAAGGCAATGGAAGTTGCCAGGGAAGCAGGGTGCTTGCTCTCTTATGACCCAAACTTGCGGCTACCCTTGTGGCCCTCGGCCGAGGAAGCACGGCAGCAAATACTTAGCATATGGGACAAGGCTGATGTGATCAAGGTCAGTGATGTGGAACTGGAATTCCTAACTGGAAGTGACAAAATTGATGATGCATCGGCTCTCTCCCTGTGGCATCCCAATTTAAAGTTGCTTCTTGTCACTCTTGGAGAACATGGTTCTAGGTACTATACCAAGAATTTCCGTGGATCAGTGGAGGCTTTTCATGTCAACACAGTTGACACAACTGGCGCTGGTGATTCCTTTGTTGGTGCACTATTAAGCAAGATTGTCGATGATCAATCCATACTTGAAGATGAAGCAAGGTTAAGGGAAGTACTCAAGTTTACAAATGCGTGTGGGGCAATTACAACTACTAAAAAGGGAGCAATTCCTGCTCTTCCCACAGAGGCTGATGCCCTCAAGCTGATCAAAGAGGCATAG 993 0.5388 MASTNALPPTGNGLIVSFGEMLIDFVPTVSGVSLAEAPGFLKAPGGAPANVAIAVARLGGKAAFVGKLGDDEFGHMLAGILKENDVRSDGINFDKGARTALAFVTLRADGEREFMFYRNPSADMLLTPEDLNLELIRSAKVFHYGSISLIVEPCRSAHLKAMEVAREAGCLLSYDPNLRLPLWPSAEEARQQILSIWDKADVIKVSDVELEFLTGSDKIDDASALSLWHPNLKLLLVTLGEHGSRYYTKNFRGSVEAFHVNTVDTTGAGDSFVGALLSKIVDDQSILEDEARLREVLKFTNACGAITTTKKGAIPALPTEADALKLIKEA* 331
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Gso12g0431 330 Pfam pfkB family carbohydrate kinase 14 319 IPR011611 -
Gso12g0431 330 ProSitePatterns pfkB family of carbohydrate kinases signature 1. 45 69 IPR002173 GO:0016773
Gso12g0431 330 PRINTS Ribokinase signature 40 59 IPR002139 GO:0016301
Gso12g0431 330 PRINTS Ribokinase signature 195 210 IPR002139 GO:0016301
Gso12g0431 330 PRINTS Ribokinase signature 235 246 IPR002139 GO:0016301
Gso12g0431 330 ProSitePatterns pfkB family of carbohydrate kinases signature 2. 264 277 IPR002173 GO:0016773
Gso12g0431 330 PANTHER HEXOKINASE FAMILY MEMBER 20 324 - -
Gso12g0431 330 PANTHER BNAA04G18320D PROTEIN 20 324 - -
Gso12g0431 330 Gene3D - 13 330 IPR029056 -
Gso12g0431 330 SUPERFAMILY Ribokinase-like 15 326 IPR029056 -
Gso12g0431 330 CDD bac_FRK 14 314 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Gso12g0431 Gso-Chr12 3753603 3757679 Wgd
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Gso12g0431 K00847 - gmx:100812560 645.966
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Gso12g0431 12 3753603 3757679 Gso11g1083 11 9679043 9684155 GST
Gso15g0266 15 2414059 2417853 Gso12g0431 12 3753603 3757679 PCT
Gso11g3542 11 51217057 51220916 Gso12g0431 12 3753603 3757679 PCT
Gso12g0431 12 3753603 3757679 Gso15g0266 15 2414059 2417853 PCT
Gso12g0431 12 3753603 3757679 Gso11g3542 11 51217057 51220916 PCT