Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Gso11g3542 ATGGCGTTGAACAATGGCGTCCCCGCCACCGGCACCGGCCTCATCGTCAGCTTCGGTGAGATGCTCATCGACTTCGTCCCCACCGTCTCTGGCGTGTCCCTGGCCGAGGCCCCTGGCTTCCTCAAGGCCCCCGGCGGCGCCCCCGCTAACGTCGCCATCGCCGTGTCGCGCCTCGGCGGCAAAGCCGCCTTCGTCGGCAAGCTCGGCGACGACGAGTTCGGCCACATGCTCGCCGGAATCCTCAAGGAAAACGGCGTTCGCGCCGACGGCATCAACTTTGACCAGGGCGCACGCACCGCCCTGGCCTTCGTGACCCTACGCGCCGACGGGGAGCGTGAGTTCATGTTCTACAGAAACCCCAGCGCCGACATGCTCCTCAAGCCCGAAGAACTCAATCTCGAACTCATCAGATCTGCAAAAGTTTTCCATTACGGATCAATCAGTTTGATCGTGGAGCCATGCAGATCAGCACACTTGAAGGCAATGGAAGTAGCCAAGGAATCTGGGTGCTTGCTCTCCTATGACCCCAACCTTCGTCTACCTTTGTGGCCTTCGGCTGAGGAAGCTCGTAAGCAAATACTGAGCATTTGGGAGAAGGCTGATTTGATCAAGGTCAGTGATGCGGAGCTTGAGTTCCTCACAGGAAGTGACAAGATTGATGATGAATCTGCTTTGTCATTGTGGCACCCCAATTTGAAGTTGCTCCTTGTCACTCTTGGGGAACATGGTTCCAGATACTACACCAAGAGTTTCAAAGGATCGGTAGATGCTTTCCATGTCAATACAGTTGATACAACTGGTGCCGGTGATTCCTTTGTTGGTGCTTTATTGGCCAAGATTGTCGATGATCAGTCCATACTTGAAGATGAACCAAGGTTAAGAGAAGTACTGAAGTTTGCAAATGCATGTGGAGCTATTACAACTACCCAAAAGGGAGCAATTCCGGCCCTTCCCAAAGAGGAGGCTGCACTGAAACTGATCAAAGGGGGGTCATAG 996 0.5412 MALNNGVPATGTGLIVSFGEMLIDFVPTVSGVSLAEAPGFLKAPGGAPANVAIAVSRLGGKAAFVGKLGDDEFGHMLAGILKENGVRADGINFDQGARTALAFVTLRADGEREFMFYRNPSADMLLKPEELNLELIRSAKVFHYGSISLIVEPCRSAHLKAMEVAKESGCLLSYDPNLRLPLWPSAEEARKQILSIWEKADLIKVSDAELEFLTGSDKIDDESALSLWHPNLKLLLVTLGEHGSRYYTKSFKGSVDAFHVNTVDTTGAGDSFVGALLAKIVDDQSILEDEPRLREVLKFANACGAITTTQKGAIPALPKEEAALKLIKGGS* 332
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Gso11g3542 331 SUPERFAMILY Ribokinase-like 15 321 IPR029056 -
Gso11g3542 331 PANTHER BNAA04G18320D PROTEIN 20 318 - -
Gso11g3542 331 ProSitePatterns pfkB family of carbohydrate kinases signature 1. 45 69 IPR002173 GO:0016773
Gso11g3542 331 Gene3D - 13 330 IPR029056 -
Gso11g3542 331 ProSitePatterns pfkB family of carbohydrate kinases signature 2. 264 277 IPR002173 GO:0016773
Gso11g3542 331 Pfam pfkB family carbohydrate kinase 14 319 IPR011611 -
Gso11g3542 331 PRINTS Ribokinase signature 40 59 IPR002139 GO:0016301
Gso11g3542 331 PRINTS Ribokinase signature 195 210 IPR002139 GO:0016301
Gso11g3542 331 PRINTS Ribokinase signature 235 246 IPR002139 GO:0016301
Gso11g3542 331 PANTHER HEXOKINASE FAMILY MEMBER 20 318 - -
Gso11g3542 331 CDD bac_FRK 14 314 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Gso11g3542 Gso-Chr11 51217057 51220916 Dispersed/Wgd
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Gso11g3542 K00847 - gmx:100814192 650.973
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Gso15g0266 15 2414059 2417853 Gso11g3542 11 51217057 51220916 GST
Gso11g3542 11 51217057 51220916 Gso12g0431 12 3753603 3757679 PCT
Gso11g3542 11 51217057 51220916 Gso11g1083 11 9679043 9684155 PCT
Gso12g0431 12 3753603 3757679 Gso11g3542 11 51217057 51220916 PCT
Gso11g1083 11 9679043 9684155 Gso11g3542 11 51217057 51220916 PCT