Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Gma20g02219 ATGACTTCTCTGAGCAGAGAATTGGTGTTTCTCATACTCCAGTTTCTGGAGGAAGAGAAATTCAAAGAATCCGTACACAAGCTTGAGAAAGAATCTGGGTTCTTTTTTAACATGAAGTACTTTGAGGAAAAAGTGCAGGCTGGCGAGTGGGAAGAGGTTGAGAAGTACTTATCAGGATTTACCAAAGTTGATGATAATAGATACTCAATGAAAATATTTTTTGAAATCAGGAAACAGAAATATCTGGAAGCACTTGATCAGCAAGACAAGGCAAAGGCCGTGGAGATATTAGTGGGTGATTTGAAAATGTTCTCCACCTTCAATGAGGAGCTATACAAAGAAATAACCCAGTTATTAACTCTTACTAATTTCAGGGAGAATGAGCAGCTATCCAAGTATGGTGACACCAAAACTGCTCGAAGCATTATGTTGATAGAACTGAAAAAACTCATAGAGGCAAATCCTCTTTTCCGTGATAAGCTTATCTTCCCTACCCTTAAGTCATCAAGACTGCGAACTTTGATCAATCAAAGTCTAAACTGGCAGCATCAGCTCTGCAAAAACCCAAGGCCAAATCCAGATATTAAGACTTTATTCACAGATCACACATGTGCACCTCCCAATGGTCCTCTGGCGCCTACACCCGTCAATCTTCCAATTGCTGCAGTTGCAAAGCCTGCTGCTTATACTTCACTTGGAGCTCATGGTCCCTTCCCACCTGCTGCTGCTGCAACTGCCAATGCTAATGCTTTGGCTGGTTGGATGGCCAATGCCTCAGCTTCATCATCTGTCCAAGCAGCTGTTGTCACGGCATCAACTATGCCTGTCCCACAGAATCAAGTGCCTATCTTGAAACGTCCTAGAACACCTCCTGCAAATCCTGGCATGATTGATTATCAGAATGCTGATCATGAACAGCTAATGAAAAGGCTTCGTCCTGGTCATTCTGTAGAGGAGGTTTCTTATCCCTTGGCTCGACAAGCCTCTTGGTCGCTGGATGATCTACCAAGAACTGTGACTATGACATTGCATCAAGGATCCTCTGTGACGAGCATGGATTTTCATCCTTCTCATCATACCTTACTTCTTGCTGGTTCAAATAATGGAGAAATTAGCCTCTGGGAACTCAGTTTGCGAGAAAAGTTGGTCTCAAAGCCATTCAAGATATGGGATGTGTCTGCATGCTCATTACCATTTCAGGCTGCTGCAGTCAAGGATGCACCTATTTCAGTCAGTCGGGTCACATGGAGCCCTGATGGAAGTTTTGTGGGTATTGCTTTTACTAAACATTTGATTCACTTGTATGCTTACACTGGACCAAATGAGCTAACCCAGCGTATAGAGGTTGATGCTCATGTTGGGGGTGTGAATGACTTGTCATTTGCTCATCCAAATAAACAGATGTGTATTGTGACTTGTGGAGATGATAAGTTGATAAAGGTATGGGATTTAAATGGACGAAAACTATTCTCCTTTGAGGGCCACGAAGCACCTGTGTATTCCATTTGTCCCCATCACAAAGAGAACATTCAGTTCATATTTTCAACTGCCATTGATGGGAAAATAAAGGCATGGTTATACGATAACATGGGTTCTAGGGTTGACTATGATGCCCCTGGTCACTGGTGCACTACAATGCTTTACAGTGCAGATGGAACTAGGTTATTTTCTTGTGGGACAAGTAAAGATGGAGAGTCTTTTCTTGTTGAATGGAATGAAAGTGAAGGCGCCATCAAGAGAACATACAATGGATTCAGAAAAAAATCTACTGGTGTTGTGCAGTTTGACACAACCCAAAATCGCTTTTTGGCTGCAGGTGAAGATGGTCAAGTTAAGTTTTGGGACATGGACAATATTAATCTTCTAATAAGCAGTGATGCCGATGGAGGATTACAGAGCCTTCCACGCTTGAGATTCAACAAGGAAGGTAATATTCTTGCTGTTACTACCGTGGACAATGGTTTCAAGATACTTGCTAATGCTTCTGGTCTTAGATCTTTAAGAACCATTGAAACTCCGGCATTTGAAGCATTGAGGTCACCCATTGAATCAACTCCAATTAAGGTATCTGGCTCTTCTACTGTTAATGTTAGTCCGGTCAACTGTAAAGTGGAAAGAAGCTCCCCTGTCAGGCCTTCTCCAATTCTTAATGGAGTTGATCCCATGGGCCGAAGTGCAGAGAAACCAAGAACTGTGGAAGATGTAATAGATAGAGCTAAACCATGGCAACTATCTGAAATTCTGGATCCTGTCCAATGTCGGTCAGTTACCATGCCTGAGAGCACAGATTCTTCCAGCAAGGTTGTCAGACTTTTATATACAAACTCTGCTGTTGGTATTTTGGCCCTTGGTTCAAATGGTATCCAGAAGCTTTGGAAATGGGCTCGCAGTGAACAGAATCCTACTGGGAAGGCTACTGCCAATGTTGTTCCACTGCATTGGCAACCCAACAATGGTCTTCTTATGACTAATGATATCTCGGGCGTCAACCTTGAAGAAGCAGTACCTTGCATTGCCCTCTCAAAAAATGACTCATACGTTATGTCTGCCTGTGGTGGAAAGGTTTCTCTATTTAACATGATGACATTCAAGGTAATGACAACATTCATGCCGCCGCCTCCTGCTTCTACCTTCCTAGCTTTCCATCCCCAGGATAACAACATTATTGCCATTGGGATGGAGGATTCAACCATTCACATCTATAATGTCAGAGTCGATGAGGTGAAATCAAAATTGAAAGGCCACCAGAAGCGTATTACTGGTTTAGCTTTTTCTACCAATCTTAaCATACTGGTCTCATCTGGTGCTGATGCTCATCTTTGTGTGTGGAGTATAGACACATGGGAGAAAAGAAAATCAATTCCAATACAGCTACCCGCAGGAAAGTCACCTGTTGGTGATACACGAGTACAGTTCCATTCTGATCAACTTCGCTTATTGGTAGTTCATGAGACTCAATTGGCAATATATGATGCCTCTAAGATGGAACGCATTCGGCAGTGGGTTCCCCAAGATGTTCTGTCTGCCCCCATATCGTATGCAGCTTATTCCTGCAACAGTCAGTTAATATATGCGACATTTTGTGATGCCAACATTGGCGTTTTTGATGCTGATAGCTTGAGGCTCAGATGTCGTATTGCACCATCAATATGCTTGTCACCGGCAGCTTTAAGTGGAAGTCAAGGTGTGTATCCTCTTGTGGTTGCTGCCCATCCTCTAGAACCTAATCAGTTTGCTGTTGGGCTGACGGATGGATCTGTCAAAGTGATAGAACCGAACGAATCAGAGGGTAAGTGGGGAACCTCCCCACCTATGGACAATGGAATATTGAATGGTAGGGCAGGATCATCATCTACAACAAGCAACCACACCGCTGATCAGGCTCAAAGATAA 3393 0.4309 MTSLSRELVFLILQFLEEEKFKESVHKLEKESGFFFNMKYFEEKVQAGEWEEVEKYLSGFTKVDDNRYSMKIFFEIRKQKYLEALDQQDKAKAVEILVGDLKMFSTFNEELYKEITQLLTLTNFRENEQLSKYGDTKTARSIMLIELKKLIEANPLFRDKLIFPTLKSSRLRTLINQSLNWQHQLCKNPRPNPDIKTLFTDHTCAPPNGPLAPTPVNLPIAAVAKPAAYTSLGAHGPFPPAAAATANANALAGWMANASASSSVQAAVVTASTMPVPQNQVPILKRPRTPPANPGMIDYQNADHEQLMKRLRPGHSVEEVSYPLARQASWSLDDLPRTVTMTLHQGSSVTSMDFHPSHHTLLLAGSNNGEISLWELSLREKLVSKPFKIWDVSACSLPFQAAAVKDAPISVSRVTWSPDGSFVGIAFTKHLIHLYAYTGPNELTQRIEVDAHVGGVNDLSFAHPNKQMCIVTCGDDKLIKVWDLNGRKLFSFEGHEAPVYSICPHHKENIQFIFSTAIDGKIKAWLYDNMGSRVDYDAPGHWCTTMLYSADGTRLFSCGTSKDGESFLVEWNESEGAIKRTYNGFRKKSTGVVQFDTTQNRFLAAGEDGQVKFWDMDNINLLISSDADGGLQSLPRLRFNKEGNILAVTTVDNGFKILANASGLRSLRTIETPAFEALRSPIESTPIKVSGSSTVNVSPVNCKVERSSPVRPSPILNGVDPMGRSAEKPRTVEDVIDRAKPWQLSEILDPVQCRSVTMPESTDSSSKVVRLLYTNSAVGILALGSNGIQKLWKWARSEQNPTGKATANVVPLHWQPNNGLLMTNDISGVNLEEAVPCIALSKNDSYVMSACGGKVSLFNMMTFKVMTTFMPPPPASTFLAFHPQDNNIIAIGMEDSTIHIYNVRVDEVKSKLKGHQKRITGLAFSTNLNILVSSGADAHLCVWSIDTWEKRKSIPIQLPAGKSPVGDTRVQFHSDQLRLLVVHETQLAIYDASKMERIRQWVPQDVLSAPISYAAYSCNSQLIYATFCDANIGVFDADSLRLRCRIAPSICLSPAALSGSQGVYPLVVAAHPLEPNQFAVGLTDGSVKVIEPNESEGKWGTSPPMDNGILNGRAGSSSTTSNHTADQAQR 1130
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Gma20g02219 1130 ProSitePatterns Trp-Asp (WD) repeats signature. 470 484 IPR019775 -
Gma20g02219 1130 Gene3D - 408 665 IPR015943 GO:0005515
Gma20g02219 1130 MobiDBLite consensus disorder prediction 1111 1130 - -
Gma20g02219 1130 Gene3D - 329 386 IPR015943 GO:0005515
Gma20g02219 1130 ProSiteProfiles LIS1 homology (LisH) motif profile. 4 36 IPR006594 GO:0005515
Gma20g02219 1130 ProSiteProfiles Trp-Asp (WD) repeats profile. 912 953 IPR001680 GO:0005515
Gma20g02219 1130 SUPERFAMILY WD40 repeat-like 330 525 IPR036322 GO:0005515
Gma20g02219 1130 PANTHER TOPLESS-RELATED PROTEIN 1-RELATED 1 1130 IPR027728 GO:0006355
Gma20g02219 1130 ProSiteProfiles Trp-Asp (WD) repeats profile. 593 624 IPR001680 GO:0005515
Gma20g02219 1130 ProSiteProfiles Trp-Asp (WD) repeats circular profile. 912 947 - -
Gma20g02219 1130 SMART WD40_4 1000 1036 IPR001680 GO:0005515
Gma20g02219 1130 SMART WD40_4 862 902 IPR001680 GO:0005515
Gma20g02219 1130 SMART WD40_4 398 436 IPR001680 GO:0005515
Gma20g02219 1130 SMART WD40_4 336 375 IPR001680 GO:0005515
Gma20g02219 1130 SMART WD40_4 485 526 IPR001680 GO:0005515
Gma20g02219 1130 SMART WD40_4 440 483 IPR001680 GO:0005515
Gma20g02219 1130 SMART WD40_4 1050 1091 IPR001680 GO:0005515
Gma20g02219 1130 SMART WD40_4 529 572 IPR001680 GO:0005515
Gma20g02219 1130 SMART WD40_4 575 615 IPR001680 GO:0005515
Gma20g02219 1130 SMART WD40_4 823 859 IPR001680 GO:0005515
Gma20g02219 1130 SMART WD40_4 905 944 IPR001680 GO:0005515
Gma20g02219 1130 SMART ctlh 34 92 IPR006595 -
Gma20g02219 1130 SUPERFAMILY DPP6 N-terminal domain-like 968 1105 - -
Gma20g02219 1130 MobiDBLite consensus disorder prediction 1093 1130 - -
Gma20g02219 1130 ProSiteProfiles Trp-Asp (WD) repeats profile. 449 492 IPR001680 GO:0005515
Gma20g02219 1130 SUPERFAMILY Quinoprotein alcohol dehydrogenase-like 453 949 IPR011047 -
Gma20g02219 1130 MobiDBLite consensus disorder prediction 705 730 - -
Gma20g02219 1130 Gene3D - 780 1102 IPR015943 GO:0005515
Gma20g02219 1130 Pfam WD domain, G-beta repeat 911 944 IPR001680 GO:0005515
Gma20g02219 1130 Pfam WD domain, G-beta repeat 344 374 IPR001680 GO:0005515
Gma20g02219 1130 Pfam WD domain, G-beta repeat 449 483 IPR001680 GO:0005515
Gma20g02219 1130 ProSitePatterns Trp-Asp (WD) repeats signature. 362 376 IPR019775 -
Gma20g02219 1130 SMART Lish 4 36 IPR006594 GO:0005515
Gma20g02219 1130 ProSiteProfiles C-terminal to LisH (CTLH) motif profile. 34 92 IPR006595 -
Gma20g02219 1130 ProSiteProfiles Trp-Asp (WD) repeats profile. 342 384 IPR001680 GO:0005515
Gma20g02219 1130 PANTHER PROTEIN, PUTATIVE-RELATED 1 1130 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Gma20g02219 Gma-Chr20 49340389 49350377 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Gma20g02219 430 643 Miscellaneous Gene Families AT5G08390 22.831 2.09e-06 50.1
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Gma20g02219 - - gmx:100793575 2246.47
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Gma20g02219 20 49340389 49350377 Gma20g02219 20 49340389 49350377 ECH
Gma10g01482 10 41928373 41937545 Gma20g02219 20 49340389 49350377 GST
Gma19g02186 19 50677464 50686622 Gma20g02219 20 49340389 49350377 PCT
Gma03g02152 03 46968035 46976513 Gma20g02219 20 49340389 49350377 PCT
Gma20g02219 20 49340389 49350377 Gma19g02186 19 50677464 50686622 PCT
Gma20g02219 20 49340389 49350377 Gma03g02152 03 46968035 46976513 PCT