Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Gma03g02152 ATGACTTCTTTGAGCCGAGAATTAGTGTTTCTGATACTCCAATTTTTGGAGGAGGAGAAGTTCAAGGAGTCGGTGCACAAGCTTGAGAAAGAATCTGGGTTTTTCTTCAATATGAAGTACTTTGAGGAAAAAGTACAGGCTGGTGAATGGGAAGAAGTTGAGAAGTACTTAACAGGGTTTACCAAAGTTGATGATAATAGATACTCCATGAAAATATTCTTTGAAATCAGGAAGCAAAAATATCTAGAAGCACTTGATGGGCAAGACAAAGCAAAGGCTGTTGAGATATTGGTGGGTGATTTAAAAGTTTTCTCCACCTTCAATGAGGAACTATACAAAGAAATCACCCAGCTGTTAACTCTTACTAACTTCAGGGAGAATGAACAGCTGTCTAAGTATGGCGACACCAAAACTGCTCGAGGGATTATGTTGATAGAGCTAAAAAAGCTCATAGAGGCAAATCCTCTTTTCCGTGATAAACTTATCTTCCCTACCCTTAGGTCATCAAGATTGCGGACGTTGATCAATCAAAGTTTAAACTGGCAACACCAGCTTTGCAAAAACCCTAGGCCAAATCCGGATATAAAGACTTTATTCACTGACCACACATGTACACCTCCTAATGGTCCTCTAGCACCTACACCTGTCAATCTTCCTGTTGCTGCGGTTGCAAAGCCTGCTGCTTATACTTCAATTGGTTCTCATGGTCCCTTTCCGCCTGCCGCGGCAACTGCTAACACTAATGCTTTGGCTGGTTGGATGGCCAATGCCTCAGCTTCATCATCTGTCCAAGCAGCTGTCGTCACAGCATCAACAATACCTGTTCCACAGAATCAAGTGTCTATCTTGAAGCGTCCAAGAACACCTCCGACAACTCCAGGCATGGCAGATTATCAGAATGCTGATCATGAACAGTTAATGAAAAGACTCCGGCCTGCTCCTTCTGTAGAGGAGGTTTCATATCCTGCTGCTCGACAAGCCTCTTGCTCACTGGATGATTTACCAAGAACAGTGGCTATGACATTGCATCAAGGATCCTCTGTGACAAGCATGGACTTTCATCCTTCTCACCCAACCTTACTTCTCGCAGTTGGTTCTAATAATGGTGAAATTTCACTTTGGGAACTTGGGTTTCGAGACAGGTTGGTCTCAAAGCCATTCAAGATATGGGATATCTCAGCGTGTTCATTACCATTTCAGGCAGCTATGGTCAAAGATTCACCTATTTCTGCCAGCCGTGTCACATGGAGCCTTGATGGAAATTTTGTGGGTGTTGCATTTACTAAACATTTGATTCACTTGTATGCCTACACTGGATCAAATGAGTTGGCTCAGCGTATAGAGGTTGATGCCCATATTGGTGGAGTTAATGACTTAGCATTTGCTCATCTGAATAAACAACTCTGTATTGTGACTTGTGGAGATGACAAGTTGATAAAGGTGTGGGATATAGCTGGACGGAAACTATTTAACTTTGAGGGGCATGAGGCAGCTGTATATTCTATCTGTCCTCATCACAAGGAGAGCATTCAGTTTGTATTTTCAACTGCCATTGATGGCAAAATAAAAGCCTGGTTATACGATAATATGGGTTCTAGGGTTGATTATGATGCCCCAGGTCATTGGTGTACTACAATGCTTTACAGTGCTGATGGAAGTAGACTGTTTTCTTGCGGAACTAGTAAAGATGGAGAGTCATTTCTTGTTGAATGGAATGAAAGTGAAGGAGCCATTAAGAGAACATACAATGGGTTCAGAAAGAAATCCACTGGTGTTGTGCAGTTTGACACAACCCAAAATCGATTTTTGGCTGCTGGTGAAGATGGCCAAATCAAATTTTGGGATATGGACAACATTAATCTTTTAACAAGCACTGATGCAGAGGGTGGACTACAGACCCTTCCACACTTGAGATTCAACAAGGAAGGAAATCTTCTTGCTGTTACTACTGCAGACAAGGGATTCAAAATTCTTGCTAATGCTAATGGTCTTAGATCCTTGAGAACAGTTGAAACTCCAGGATTTGAAGCATTGAGGTCACCAATTGAATCTGCTGCAGTCAAGGCATCTGGCTCTTCTGCTGTTAATGTTAGTCCTGTCAACTGTAAAGTAGAAAAGAGCTCACCTGTCGGGCCTTCTCCAATTCTTAATGGAGTCGATACCACAGGTCAAAATGCGGAGAAACCTAGAACTGTAGAAGATGGAGTAGATAGAGCTAAACCATGGCAGCTGTCTGAAATTGTGGATGCTGTCCAATGTCGGTTAGTTACCATGCCTGACAGTACAGATTCTTCCAGCAAGGTTGTTCGACTTTTATATACAAACTCTGGTGCTGGTGTTTTGGCACTTGGTTCAAATGGTGTTCAGAAGCTGTGGAAGTGGGCTCGTAGTGAACAAAATCCCAATGGGAAGGCAACTGCCAGTGTTGTTCCACAGCATTGGCAACCCAACAGTGGTCTTCTTATGACTAATGATGTCGCGGGTGTCAACCTTGATGAAGCTGTTCCTTGCATTGCACTCTCAAAGAATGACTCATATGTTATGTCTGCATGTGGTGGAAAGGTTTCGTTATTTAACATGATGACATTCAAGGTACATGTCCAGAGATACAACCATGACATTCCATACAGCCGCAATGTTTACTGTATACTTAGGTTTATTTTCTATCAGGTAATGACAACATTCATGCCACCACCACCCGCCTCTACCTTTCTAGCTTTCCACCCTCAAGATAATAACATCATAGCCATTGGGATGGAGGATTCAACAATTCACATATACAATGTTAGAGTGGATGAGGTGAAATCTAAATTGAAGGGTCATCAAAAGCGAATTACTGGTTTAGCCTTTTCAACCTGTCTTAACATCCTGGTTTCATCTGGTGCTGATGCTCAACTTTGTGTATGGAGTATTGATACATGGGAGAAAAGAAAATCAGTTCCTATACAACTACCCGCAGGAAAGGCTCCTGTTGGTGACACTCGTGTGCAGTTCCATTTAGACCAAATCCGGTTACTGGTGGCCCATGAGACTCAGTTGGCAATATATGATGCCTCTAAGATGGATCGCATTAGGCAGTGGGTTCCACAAGATGTTCTGGCTGCTCCCATATCATATGCAGCTTATTCCTGCAACAGTCAGTTAATATATGCTACATTTTGCGATGGCAACACTGGGGTTTTTGATGCTGACAGCTTGAGACTAAGATGTCGTATTGCACTATCCACATACTTTTCACCTCCAGCAGCTTTAAGCGGGAATCAATCTGCGTATCCTGTTGCCATTGCGGCTCATCCACTGGAACCCAACCAATTTGCTGTTGGATTGACAGATGGGTCCGTGAAAGTGATAGAGCCTAGTGAATCAGAAGGTAAGTGGGGAACCAGTCCACCTATGGATAATGGAATATTGAACGGTAGGGCAGCATCAACATCTATAACAAGCAACCTCACACCCGACCAGGCACAAAGATAA 3474 0.4289 MTSLSRELVFLILQFLEEEKFKESVHKLEKESGFFFNMKYFEEKVQAGEWEEVEKYLTGFTKVDDNRYSMKIFFEIRKQKYLEALDGQDKAKAVEILVGDLKVFSTFNEELYKEITQLLTLTNFRENEQLSKYGDTKTARGIMLIELKKLIEANPLFRDKLIFPTLRSSRLRTLINQSLNWQHQLCKNPRPNPDIKTLFTDHTCTPPNGPLAPTPVNLPVAAVAKPAAYTSIGSHGPFPPAAATANTNALAGWMANASASSSVQAAVVTASTIPVPQNQVSILKRPRTPPTTPGMADYQNADHEQLMKRLRPAPSVEEVSYPAARQASCSLDDLPRTVAMTLHQGSSVTSMDFHPSHPTLLLAVGSNNGEISLWELGFRDRLVSKPFKIWDISACSLPFQAAMVKDSPISASRVTWSLDGNFVGVAFTKHLIHLYAYTGSNELAQRIEVDAHIGGVNDLAFAHLNKQLCIVTCGDDKLIKVWDIAGRKLFNFEGHEAAVYSICPHHKESIQFVFSTAIDGKIKAWLYDNMGSRVDYDAPGHWCTTMLYSADGSRLFSCGTSKDGESFLVEWNESEGAIKRTYNGFRKKSTGVVQFDTTQNRFLAAGEDGQIKFWDMDNINLLTSTDAEGGLQTLPHLRFNKEGNLLAVTTADKGFKILANANGLRSLRTVETPGFEALRSPIESAAVKASGSSAVNVSPVNCKVEKSSPVGPSPILNGVDTTGQNAEKPRTVEDGVDRAKPWQLSEIVDAVQCRLVTMPDSTDSSSKVVRLLYTNSGAGVLALGSNGVQKLWKWARSEQNPNGKATASVVPQHWQPNSGLLMTNDVAGVNLDEAVPCIALSKNDSYVMSACGGKVSLFNMMTFKVHVQRYNHDIPYSRNVYCILRFIFYQVMTTFMPPPPASTFLAFHPQDNNIIAIGMEDSTIHIYNVRVDEVKSKLKGHQKRITGLAFSTCLNILVSSGADAQLCVWSIDTWEKRKSVPIQLPAGKAPVGDTRVQFHLDQIRLLVAHETQLAIYDASKMDRIRQWVPQDVLAAPISYAAYSCNSQLIYATFCDGNTGVFDADSLRLRCRIALSTYFSPPAALSGNQSAYPVAIAAHPLEPNQFAVGLTDGSVKVIEPSESEGKWGTSPPMDNGILNGRAASTSITSNLTPDQAQR 1157
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Gma03g02152 1157 ProSitePatterns Trp-Asp (WD) repeats signature. 470 484 IPR019775 -
Gma03g02152 1157 SMART ctlh 34 92 IPR006595 -
Gma03g02152 1157 Pfam WD domain, G-beta repeat 343 374 IPR001680 GO:0005515
Gma03g02152 1157 Pfam WD domain, G-beta repeat 937 970 IPR001680 GO:0005515
Gma03g02152 1157 Pfam WD domain, G-beta repeat 449 483 IPR001680 GO:0005515
Gma03g02152 1157 PANTHER PROTEIN, PUTATIVE-RELATED 884 1157 - -
Gma03g02152 1157 ProSiteProfiles Trp-Asp (WD) repeats profile. 938 979 IPR001680 GO:0005515
Gma03g02152 1157 PANTHER PROTEIN, PUTATIVE-RELATED 1 866 - -
Gma03g02152 1157 Gene3D - 830 1128 IPR015943 GO:0005515
Gma03g02152 1157 SMART Lish 4 36 IPR006594 GO:0005515
Gma03g02152 1157 MobiDBLite consensus disorder prediction 706 737 - -
Gma03g02152 1157 Gene3D - 564 692 IPR015943 GO:0005515
Gma03g02152 1157 ProSiteProfiles Trp-Asp (WD) repeats circular profile. 938 973 - -
Gma03g02152 1157 MobiDBLite consensus disorder prediction 1120 1157 - -
Gma03g02152 1157 ProSiteProfiles LIS1 homology (LisH) motif profile. 4 36 IPR006594 GO:0005515
Gma03g02152 1157 MobiDBLite consensus disorder prediction 1138 1157 - -
Gma03g02152 1157 SUPERFAMILY Quinoprotein alcohol dehydrogenase-like 470 975 IPR011047 -
Gma03g02152 1157 SMART WD40_4 575 615 IPR001680 GO:0005515
Gma03g02152 1157 SMART WD40_4 823 859 IPR001680 GO:0005515
Gma03g02152 1157 SMART WD40_4 335 375 IPR001680 GO:0005515
Gma03g02152 1157 SMART WD40_4 931 970 IPR001680 GO:0005515
Gma03g02152 1157 SMART WD40_4 1026 1062 IPR001680 GO:0005515
Gma03g02152 1157 SMART WD40_4 529 572 IPR001680 GO:0005515
Gma03g02152 1157 SMART WD40_4 888 928 IPR001680 GO:0005515
Gma03g02152 1157 SMART WD40_4 1077 1118 IPR001680 GO:0005515
Gma03g02152 1157 SMART WD40_4 440 483 IPR001680 GO:0005515
Gma03g02152 1157 SMART WD40_4 485 526 IPR001680 GO:0005515
Gma03g02152 1157 ProSiteProfiles Trp-Asp (WD) repeats profile. 593 624 IPR001680 GO:0005515
Gma03g02152 1157 MobiDBLite consensus disorder prediction 714 728 - -
Gma03g02152 1157 ProSiteProfiles Trp-Asp (WD) repeats profile. 449 484 IPR001680 GO:0005515
Gma03g02152 1157 ProSiteProfiles C-terminal to LisH (CTLH) motif profile. 34 92 IPR006595 -
Gma03g02152 1157 PANTHER TOPLESS-RELATED PROTEIN 1-RELATED 884 1157 IPR027728 GO:0006355
Gma03g02152 1157 SUPERFAMILY WD40 repeat-like 340 528 IPR036322 GO:0005515
Gma03g02152 1157 Gene3D - 319 563 IPR015943 GO:0005515
Gma03g02152 1157 PANTHER TOPLESS-RELATED PROTEIN 1-RELATED 1 866 IPR027728 GO:0006355
Gma03g02152 1157 SUPERFAMILY WD40 repeat-like 903 1120 IPR036322 GO:0005515
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Gma03g02152 Gma-Chr3 46968035 46976513 Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Gma03g02152 448 657 Miscellaneous Gene Families AT5G08390 26.636 2.72e-07 53.1
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Gma03g02152 - - gmx:100800771 2222.59
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Gma03g02152 03 46968035 46976513 Gma03g02152 03 46968035 46976513 ECH
Gma19g02186 19 50677464 50686622 Gma03g02152 03 46968035 46976513 GST
Gma03g02152 03 46968035 46976513 Gma10g01482 10 41928373 41937545 PCT
Gma03g02152 03 46968035 46976513 Gma20g02219 20 49340389 49350377 PCT
Gma10g01482 10 41928373 41937545 Gma03g02152 03 46968035 46976513 PCT
Gma20g02219 20 49340389 49350377 Gma03g02152 03 46968035 46976513 PCT