Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Gma10g01482 ATGACTTCTCTGAGCAGAGAATTGGTGTTTCTCATACTCCAGTTTCTGGAGGAAGAGAAATTCAAAGAATCTGTACACAAGCTTGAGAAAGAATCTGGGTTCTTTTTCAACATGAAGTACTTTGAGGAAAAAGTGCAGGCTGGCGAGTGGGAAGAGGTTGAGAAGTACTTATCAGGATTTACCAAAGTTGATGATAATAGATACTCAATGAAAATATTTTTTGAAATCAGGAAACAGAAATATCTGGAAGCACTTGATCAGCAAGACAAGGCAAAGGCTGTGGAGATATTAGTGGGTGATTTAAAGATGTTTTCCACCTTCAATGAGGAGCTGTACAAAGAAATAACCCAGTTATTAACTCTTACTAATTTCAGGGAGAATGAGCAGCTGTCCAAGTATGGTGACACCAAAACTGCTCGAAGCATTATGCTGATAGAACTGAAAAAACTCATAGAGGCAAATCCTCTTTTCCGTGATAAGCTTATCTTCCCTACCCTTAAGTCATCAAGACTGCGAACTTTGATCAATCAAAGTCTAAACTGGCAGCATCAGCTCTGCAAAAACCCAAGGCCAAATCCAGATATTAAGACTTTATTCACAGATCACACATGTGCACCTCCTAATGGTCCTCTGGCGCCCACACCCATCAATCTTCCAATTGCTGCAGTTGCAAAGCCTGCTACTTATACTCCACTTGGAGCTCATGGTCCCTTCCCACCTGCTGCTGCAACTGCCAATGCTAATGCTTTGGCTGGTTGGATGGCCAATGCCTCAGCTTCATCATCTGTCCAAGCAGCTGTAGTCACAGCATCAACTATACCTGTCCCACAGAATCAAGTGCCTATCTTGAAACGTCCTAGAACACCTCCTGCAAATCCTGGCATGGTTGATTATCAGAATGCTGATCATGACCAGCTAATGAAAAGGCTTCGTCCTGGTCATTCTGTAGAGGAGGTTTCTTATCCCTTGGCTCGACAAGCCTCTTGGTCTCTTGATGATCTACCAAGAACTGTGACTATGACATTGCATCAAGGATCCTCTGTGACGAGCATGGATTTTCATCCTTCTCATCATACCTTACTTCTTGTTGGTTCTAATAATGGTGAAATTACCCTCTGGGAACTCAGTTTACGAGAAAAGTTGGTCTCAAAGCCATTCAAGATATGGGATGTGTCTGCATGCTCATTACCATTTCAGGCTGCTGCAGTCAAGGATGCACCTATTTCGGTCAGTCGGGTCACATGGAGCCCTGATGGAAGTTTTGTGGGTATTGCTTTTACTAAACATTTGATTCACTTGTATGCTTGCACTGGATCAAATGAGCTAACCCAGCGTATAGAGGTTGATGCTCATGTTGGGGGTGTGAATGACTTGGCATTTGCTCATCCAAATAAACAGCTGTGTATTGTGACTTGTGGAGATGATAAGTTGATAAAGGTATGGGATTTAAATGGACGAAAACTATTCTCCTTTGAGGGGCACGAAGCACCTGTGTATTCCATTTGTCCCCATCACAAAGAGAACATTCAGTTCATATTTTCAACTGCCATTGATGGGAAAATAAAGGCATGGCTATACGATAACATGGGTTCTAGGGTTGACTATGATGCCCCTGGTCACTGGTGCACTACAATGCTTTACAGTGCTGATGGAACTAGGTTATTTTCTTGTGGGACAAGTAAAGATGGAGAGTCTTTTCTTGTTGAATGGAATGAAAGTGAAGGAGCCATTAAGAGAACATACAATGGATTCAGAAAAAAATCTACTGGAGTTGTGCAGTTTGACACAACCCAAAATCGCTTTTTGGCTGCAGGTGAAGATGGCCAAGTTAAGTTTTGGGACATGGACAACATTAATCTTCTGATAAGCACTGAGGCCGATGGAGGATTACAGAGCCTTCCACGCTTGAGATTCAACAAGGAAGGAAATATTCTTGCTGTTACTACCATGGACAATGGTTTCAAGATACTTGCCAATGCTTCTGGTCTTAGATCTTTAAGAACAATTGAAACTCCGGCATTTGAAGCATTGAGGTCACCCATTGAATCTACTCCAATTAAGGTATCTGGCTCTTCTACTGTTAATGTTAGTCCGGTCAACTGTAAAGTGGAAAGAAGTTCCCCTGTCAGGCCTTCTCCAATTCTTAATGGAGTTGATCCCATGGGCCGAAGTGTAGAGAAACCAAGAACTGTGGAAGATGTAACAGATAGAGCTAAACCATGGCAACTATCTGAAATTCTGGATCCTGTCCAATGTCGGTCAGTTACCATGCCTGAGAGCACAGATTCTTCCAGCAAGGTTATTAGACTTTTATATACAAACTCTGCTGTTGGTATTTTGGCCCTTGGTTCAAATGGTATCCAGAAGCTTTGGAAATGGGCTCGTAGTGAACTGAATCCTACTGGGAAGGCTACTGCCAATGTTGTTCCACTGCATTGGCAACCCAACAACGGTCTTCTTATGACTAATGATATCTCGGGTGTCAACCTTGAAGAAGCAGTCCCTTGCATTGCACTCTCAAAAAATGACTCTTATGTTATGTCTGCCTGTGGTGGAAAGGTTTCTCTATTTAACATGATGACATTCAAGGTAATGACAACATTCATGCCACCGCCTCCTGCTTCTACCTTCCTAGCTTTCCATCCCCAGGATAACAACATTATTGCCATTGGGATGGACGATTCAACCATTCACATCTATAATGTCAGAGTGGATGAGGTGAAATCAAAATTGAAAGGCCACCAGAAGCGTATTACTGGTTTAGCTTTTTCAACCAATCTTAACATACTGGTTTCATCTGGTGCTGATGCTCATCTTTGTGTGTGGAGTATAGATACATGGGAGAAAAGAAAAGCAATTCCAATACAACTACCCGCAGGAAAGTCACCTGTTGGTGATACACGCGTACAGTTCCATTCCGATCAACTTCGCTTATTGGTAGTTCATGAGACTCAATTGGCAATATATGATGCCTCTAAGATGGAACGCATTCGGCAGTGGGTTCCCCAAGATGTTCTGTCTGCCCCCATATCATATGCAGCTTATTCCTGCAACAGTCAGTTAATATATGCTACATTTTGTGATGCCAACATTGGTGTTTTTGATGCTGATAGCTTGAGGCTCAGATGTCGTATTGCTCCATCAATATGCTTGTCACCGGCAGCTTTAAGTGGAAGTCAAGGTGTGTATCCTCTTGTGGTTGCTGCTCATCCTCTAGAACCCAACCAGTTTGCGGTTGGGTTGACGGATGGATCTGTCAAAGTGATAGAACCGAACGAGTCAGAGGGTAAGTGGGGAACCTGCCCACCAACGGACAATGGAATATTGAATGGTAGAACAGGATCATCATCTACAACAAGCAACCACACTGCTGATCAGGCTCAAAGATAA 3390 0.4283 MTSLSRELVFLILQFLEEEKFKESVHKLEKESGFFFNMKYFEEKVQAGEWEEVEKYLSGFTKVDDNRYSMKIFFEIRKQKYLEALDQQDKAKAVEILVGDLKMFSTFNEELYKEITQLLTLTNFRENEQLSKYGDTKTARSIMLIELKKLIEANPLFRDKLIFPTLKSSRLRTLINQSLNWQHQLCKNPRPNPDIKTLFTDHTCAPPNGPLAPTPINLPIAAVAKPATYTPLGAHGPFPPAAATANANALAGWMANASASSSVQAAVVTASTIPVPQNQVPILKRPRTPPANPGMVDYQNADHDQLMKRLRPGHSVEEVSYPLARQASWSLDDLPRTVTMTLHQGSSVTSMDFHPSHHTLLLVGSNNGEITLWELSLREKLVSKPFKIWDVSACSLPFQAAAVKDAPISVSRVTWSPDGSFVGIAFTKHLIHLYACTGSNELTQRIEVDAHVGGVNDLAFAHPNKQLCIVTCGDDKLIKVWDLNGRKLFSFEGHEAPVYSICPHHKENIQFIFSTAIDGKIKAWLYDNMGSRVDYDAPGHWCTTMLYSADGTRLFSCGTSKDGESFLVEWNESEGAIKRTYNGFRKKSTGVVQFDTTQNRFLAAGEDGQVKFWDMDNINLLISTEADGGLQSLPRLRFNKEGNILAVTTMDNGFKILANASGLRSLRTIETPAFEALRSPIESTPIKVSGSSTVNVSPVNCKVERSSPVRPSPILNGVDPMGRSVEKPRTVEDVTDRAKPWQLSEILDPVQCRSVTMPESTDSSSKVIRLLYTNSAVGILALGSNGIQKLWKWARSELNPTGKATANVVPLHWQPNNGLLMTNDISGVNLEEAVPCIALSKNDSYVMSACGGKVSLFNMMTFKVMTTFMPPPPASTFLAFHPQDNNIIAIGMDDSTIHIYNVRVDEVKSKLKGHQKRITGLAFSTNLNILVSSGADAHLCVWSIDTWEKRKAIPIQLPAGKSPVGDTRVQFHSDQLRLLVVHETQLAIYDASKMERIRQWVPQDVLSAPISYAAYSCNSQLIYATFCDANIGVFDADSLRLRCRIAPSICLSPAALSGSQGVYPLVVAAHPLEPNQFAVGLTDGSVKVIEPNESEGKWGTCPPTDNGILNGRTGSSSTTSNHTADQAQR 1129
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Gma10g01482 1129 ProSiteProfiles Trp-Asp (WD) repeats profile. 911 952 IPR001680 GO:0005515
Gma10g01482 1129 PANTHER TOPLESS-RELATED PROTEIN 1-RELATED 1 1129 IPR027728 GO:0006355
Gma10g01482 1129 MobiDBLite consensus disorder prediction 703 724 - -
Gma10g01482 1129 ProSiteProfiles LIS1 homology (LisH) motif profile. 4 36 IPR006594 GO:0005515
Gma10g01482 1129 ProSiteProfiles Trp-Asp (WD) repeats profile. 448 491 IPR001680 GO:0005515
Gma10g01482 1129 Gene3D - 407 670 IPR015943 GO:0005515
Gma10g01482 1129 ProSiteProfiles Trp-Asp (WD) repeats circular profile. 911 946 - -
Gma10g01482 1129 MobiDBLite consensus disorder prediction 1092 1129 - -
Gma10g01482 1129 SUPERFAMILY YVTN repeat-like/Quinoprotein amine dehydrogenase 908 1095 IPR011044 -
Gma10g01482 1129 ProSiteProfiles Trp-Asp (WD) repeats profile. 592 623 IPR001680 GO:0005515
Gma10g01482 1129 SMART ctlh 34 92 IPR006595 -
Gma10g01482 1129 Gene3D - 328 385 IPR015943 GO:0005515
Gma10g01482 1129 SUPERFAMILY Quinoprotein alcohol dehydrogenase-like 348 948 IPR011047 -
Gma10g01482 1129 Coils Coil 1124 1129 - -
Gma10g01482 1129 ProSitePatterns Trp-Asp (WD) repeats signature. 469 483 IPR019775 -
Gma10g01482 1129 Gene3D - 779 1101 IPR015943 GO:0005515
Gma10g01482 1129 PANTHER PROTEIN, PUTATIVE-RELATED 1 1129 - -
Gma10g01482 1129 MobiDBLite consensus disorder prediction 1106 1129 - -
Gma10g01482 1129 Pfam WD domain, G-beta repeat 910 943 IPR001680 GO:0005515
Gma10g01482 1129 Pfam WD domain, G-beta repeat 448 482 IPR001680 GO:0005515
Gma10g01482 1129 SMART Lish 4 36 IPR006594 GO:0005515
Gma10g01482 1129 ProSiteProfiles C-terminal to LisH (CTLH) motif profile. 34 92 IPR006595 -
Gma10g01482 1129 ProSiteProfiles Trp-Asp (WD) repeats profile. 341 383 IPR001680 GO:0005515
Gma10g01482 1129 SMART WD40_4 574 614 IPR001680 GO:0005515
Gma10g01482 1129 SMART WD40_4 484 525 IPR001680 GO:0005515
Gma10g01482 1129 SMART WD40_4 528 571 IPR001680 GO:0005515
Gma10g01482 1129 SMART WD40_4 999 1035 IPR001680 GO:0005515
Gma10g01482 1129 SMART WD40_4 397 435 IPR001680 GO:0005515
Gma10g01482 1129 SMART WD40_4 439 482 IPR001680 GO:0005515
Gma10g01482 1129 SMART WD40_4 335 374 IPR001680 GO:0005515
Gma10g01482 1129 SMART WD40_4 904 943 IPR001680 GO:0005515
Gma10g01482 1129 SMART WD40_4 822 858 IPR001680 GO:0005515
Gma10g01482 1129 SMART WD40_4 1049 1090 IPR001680 GO:0005515
Gma10g01482 1129 SMART WD40_4 861 901 IPR001680 GO:0005515
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Gma10g01482 Gma-Chr10 41928373 41937545 Dispersed/Wgd
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Gma10g01482 - - gmx:100793517 2225.67
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Gma10g01482 10 41928373 41937545 Gma10g01482 10 41928373 41937545 ECH
Gma10g01482 10 41928373 41937545 Gma20g02219 20 49340389 49350377 GST
Gma19g02186 19 50677464 50686622 Gma10g01482 10 41928373 41937545 PCT
Gma03g02152 03 46968035 46976513 Gma10g01482 10 41928373 41937545 PCT
Gma10g01482 10 41928373 41937545 Gma19g02186 19 50677464 50686622 PCT
Gma10g01482 10 41928373 41937545 Gma03g02152 03 46968035 46976513 PCT