Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Gma19g02186 ATGACTTCTTTGAGCCGAGAATTAGTATTTCTGATACTCCAATTTTTGGAGGAGGAGAAGCTGAAGGAGTCGGTGCACAAGCTCGAGAAAGAATCTGGGTTTTTCTTCAATATGAAGTACTTTGAGGAAAAAGTACAGGCTGGTGAATGGGAAGAAGTTGAGAAGTACTTAACAGGGTTTACCAAAGTTGATGATAACAGATACTCCATGAAAATATTCTTTGAAATCAGGAAGCAGAAATATCTAGAAGCACTTGATAGGCAAGACAAGGCAAAGGCTGTTGAGATATTAGTGGGTGATTTAAAAGTTTTCTCCACCTTCAATGAGGAACTATACAAAGAAATCACCCAGCTGTTAACTCTTAGTAATTTCAGGGAGAATGAGCAGCTGTCCAAGTACGGTGACACCAAAAATGCTAGAGGAATTATGTTGATAGAGCTAAAAAAGCTCATAGAGGCAAATCCTCTTTTCCGTGACAAACTTATCTTCCCTACCCTTAGGTCATCAAGATTGCGGACATTGATCAATCAAAGTTTAAATTGGCAACACCAGCTTTGCAAAAACCCTAGGCCAAATCCGGATATAAAGACTTTATTCACTGACCACACATGTACACCTCCTAATGGTCCTCTAGCACCTACACCTGTCAATCTTCCTGTTGCTGCGGTTGCAAAGCCTGCTGCTTATACTTCAATTGGTGCTCATGGTCCCTTTCTGCCTGCCACAGCAACTGCTAATGCTAATGCTTTGGCTGGTTGGATGGCCAATGCCTCAGCTTCATCATCTGTCCAAGCAGCTGTTGTCACAGCATCTGCCATACCTGTCCCACAGAATCCAGTGTCTATCTTGAAGTGTCCAAGAACACCTCCGACAACTGCAGGCATGGCGGATTATCAGAATGCTGATCATGAGCAGTTAATGAAAAGACTCCGGCCTGCTCCTTCTGTAGAGGAGGTTTCATGTCCTGCTGCTCGACCAGCCTCTTGGTCGCTGGATGATCTACCAAGAACAGTGGCTATGACATTGCATCAAGGATCCTCTGTGACAAGCATGGACTTTCATCCTTCTCACCAAACCTTACTTCTCGCAGTTGGTTCTAATAATGGTGAAATTACACTTTGGGAGCTTGGGTTGCGAGACAGGTTGGTCTCAAAGCCATTCAAGATATGGGATATCTCAGCATGCTCATTACCATTTCAGGCAGCTATGGTCAAAGATGCACCTATTTCTGTCAGCCGTGTCACATGGAGCCTTGATGGAAATTTTGTGGGTGTTGCATTTACTAAACATTTGATTCACTTGTATGCCTACACTGGATCAAATGAGTTGGCTCAGCGTATAGAGGTTGATGCCCATATTGGTGGAGTTAATGACTTGGCATTTGCTCATCCGAATAAACAACTCTGTATTGTGACTTGTGGAGATGATAAGTTGATAAAGGTCTGGGATTTAACTGGACGGAAACTATTTAACTTTGAGGGGCATGAGGCACCTGTATATTCTATCTGTCCTCATCACAAAGAGAGCATTCAGTTTGTATTTTCAACTGCCATTGATGGCAAAATAAAAGCCTGGTTATATGATAATATGGGTTCTAGGGTTGATTATGATGCCCCAGGTCATTGGTGTACTACAATGCTTTACAGTGCTGATGGAAGTAGACTGTTTTCTTGCGGAACTAGTAAAGATGGAGAATCATTTCTTGTTGAATGGAATGAAAGTGAAAGAGCTATTAAGAGAACATACAATGGGTTCAGAAAGAAATCCGCTGGTGTCGTGCAGTTTGACACAACCCAAAATTGCTTTTTGGCTGCTGGTGAAGATGGCCAAATCAAATTTTGGGACATGGACAATATTAATCTTTTGACAAGCACTGACGCAGAGGGTGGACTACAGGCCCTTCCGCACTTGAGATTCAACAAGGAAGGAAATGTGCTTGCTGTTACTACTGCAGACAATGGATTCAAAATTCTTGCTAATGCCAATGGTCTTAGATCCTTGAGAACAGTTGAAACTCCAGGATTTGAAGCATTGAGGTCACCAATTGAATCTGCTGCAGTCAAGGCATCTGGCTCTTCTGCTGTTAATGTTAGTCCTGTCAACTGTAAAGTAGAAAGGAGCTCACCAGTCAGGCCTTCTCCAATTCTTAATGGAGTTGATCCCATGGGTCGAAATGTGGAGAAACCTAGAACTGTGGAAGATGGAATAGATAAAGCTAAACCATGGCAGCTGTCTGAAATTGTGGATGCTGTCCAATGTCGGTTAGTTACAACGCCTGACAGTACAGATTCTTCCAGCAAGGTTGTTCGACTTTTATATACAAACTCTGGTGCTGGTCTTTTGGCACTTGGTTCAAATGGTGTTCAGAAGCTGTGGAAGTGGGCTCGTTGTGAACAAAATCCCAATGGGAAGGCAACTGCTAGTGTTGTTCCACAGCATTGGCAGCCCAACAGTGGTCTTCTTATGACTAATGATGTCACGGGTGTCAACCTTGATGAAGCTGTTCCTTGCATTGCACTCTCAAAGAACGACTCATATGTTATGTCTGCATGTGGCGGAAAGATTTCTTTGTTTAACATGATGACATTCAAGGTAATGACAACATTCATGCCACCACCCCCTGCCTCTACCTTTCTGGCTTTCCACCCTCAAGATAACAACATCATAGCCATTGGGATGGAGGATTCAACAATTCACATATATAATGTTAGAGTGGATGAGGTGAAATCTAAATTGAAGGGTCATCAAAAGCGAATTACTGGTTTAGCCTTTTCAACCTGTCTTAACATCCTGGTTTCATCTGGTGCTGATGCTCAACTTTGTGTATGGAGCATTGATACATGGGAGAAAAGAAAATCAGTTCCCATACAACTACCCGCAGGAAAGGCTCCTGTTGGTGACACTCGTGTGCAGTTCCATTTAGACCAAATCCGGTTACTGGTAGCCCATGAGACTCAGTTGGCAATATATGATGCCTCTAAGATGGATCGCATTAGGCAGTGGGTTCCACAAGATGTTCTGGCTGCTCCCATATCATATGCAGCTTATTCCTGCAACAGTCAGTTAATTTATGCTACATTTTCTGATGGCAACACTGGGGTTTTTGATGCCGACAGCTTGAGACTAAGATGCCGTATTGCACTATCCACATACTTTTCACCTGCAGCAGCTTTAAGTGGGAACCAGTCTGTTTATCCTGTTGTCGTTGCGGCTCATCCACTCGAGCCCAACCAATTTGCCGTTGGATTGACAGATGGGTCCGTGAAAGTGATAGAGCCTAGTGAATCAGAAGGTAAGTGGGGAACCAGTCCACCTATGGATAATGGAATATTGAACGGTAGGGCAGCATCATCATCTACAACAAGCAACCACACACCCGACCTGGCAAAAAGATAA 3396 0.4335 MTSLSRELVFLILQFLEEEKLKESVHKLEKESGFFFNMKYFEEKVQAGEWEEVEKYLTGFTKVDDNRYSMKIFFEIRKQKYLEALDRQDKAKAVEILVGDLKVFSTFNEELYKEITQLLTLSNFRENEQLSKYGDTKNARGIMLIELKKLIEANPLFRDKLIFPTLRSSRLRTLINQSLNWQHQLCKNPRPNPDIKTLFTDHTCTPPNGPLAPTPVNLPVAAVAKPAAYTSIGAHGPFLPATATANANALAGWMANASASSSVQAAVVTASAIPVPQNPVSILKCPRTPPTTAGMADYQNADHEQLMKRLRPAPSVEEVSCPAARPASWSLDDLPRTVAMTLHQGSSVTSMDFHPSHQTLLLAVGSNNGEITLWELGLRDRLVSKPFKIWDISACSLPFQAAMVKDAPISVSRVTWSLDGNFVGVAFTKHLIHLYAYTGSNELAQRIEVDAHIGGVNDLAFAHPNKQLCIVTCGDDKLIKVWDLTGRKLFNFEGHEAPVYSICPHHKESIQFVFSTAIDGKIKAWLYDNMGSRVDYDAPGHWCTTMLYSADGSRLFSCGTSKDGESFLVEWNESERAIKRTYNGFRKKSAGVVQFDTTQNCFLAAGEDGQIKFWDMDNINLLTSTDAEGGLQALPHLRFNKEGNVLAVTTADNGFKILANANGLRSLRTVETPGFEALRSPIESAAVKASGSSAVNVSPVNCKVERSSPVRPSPILNGVDPMGRNVEKPRTVEDGIDKAKPWQLSEIVDAVQCRLVTTPDSTDSSSKVVRLLYTNSGAGLLALGSNGVQKLWKWARCEQNPNGKATASVVPQHWQPNSGLLMTNDVTGVNLDEAVPCIALSKNDSYVMSACGGKISLFNMMTFKVMTTFMPPPPASTFLAFHPQDNNIIAIGMEDSTIHIYNVRVDEVKSKLKGHQKRITGLAFSTCLNILVSSGADAQLCVWSIDTWEKRKSVPIQLPAGKAPVGDTRVQFHLDQIRLLVAHETQLAIYDASKMDRIRQWVPQDVLAAPISYAAYSCNSQLIYATFSDGNTGVFDADSLRLRCRIALSTYFSPAAALSGNQSVYPVVVAAHPLEPNQFAVGLTDGSVKVIEPSESEGKWGTSPPMDNGILNGRAASSSTTSNHTPDLAKR 1131
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Gma19g02186 1131 ProSitePatterns Trp-Asp (WD) repeats signature. 470 484 IPR019775 -
Gma19g02186 1131 MobiDBLite consensus disorder prediction 706 726 - -
Gma19g02186 1131 Gene3D - 564 691 IPR015943 GO:0005515
Gma19g02186 1131 SMART Lish 4 36 IPR006594 GO:0005515
Gma19g02186 1131 SUPERFAMILY Quinoprotein alcohol dehydrogenase-like 467 949 IPR011047 -
Gma19g02186 1131 PANTHER PROTEIN, PUTATIVE-RELATED 1 1130 - -
Gma19g02186 1131 ProSiteProfiles Trp-Asp (WD) repeats profile. 912 953 IPR001680 GO:0005515
Gma19g02186 1131 ProSiteProfiles Trp-Asp (WD) repeats circular profile. 912 947 - -
Gma19g02186 1131 SUPERFAMILY WD40 repeat-like 329 528 IPR036322 GO:0005515
Gma19g02186 1131 Pfam LisH-like dimerisation domain 5 33 - -
Gma19g02186 1131 ProSiteProfiles Trp-Asp (WD) repeats profile. 449 484 IPR001680 GO:0005515
Gma19g02186 1131 ProSiteProfiles C-terminal to LisH (CTLH) motif profile. 34 92 IPR006595 -
Gma19g02186 1131 ProSiteProfiles Trp-Asp (WD) repeats profile. 593 624 IPR001680 GO:0005515
Gma19g02186 1131 Gene3D - 829 1103 IPR015943 GO:0005515
Gma19g02186 1131 SMART ctlh 34 92 IPR006595 -
Gma19g02186 1131 PANTHER TOPLESS-RELATED PROTEIN 1-RELATED 1 1130 IPR027728 GO:0006355
Gma19g02186 1131 Pfam WD domain, G-beta repeat 449 483 IPR001680 GO:0005515
Gma19g02186 1131 Pfam WD domain, G-beta repeat 911 944 IPR001680 GO:0005515
Gma19g02186 1131 SUPERFAMILY WD40 repeat-like 969 1098 IPR036322 GO:0005515
Gma19g02186 1131 SMART WD40_4 1000 1036 IPR001680 GO:0005515
Gma19g02186 1131 SMART WD40_4 335 375 IPR001680 GO:0005515
Gma19g02186 1131 SMART WD40_4 440 483 IPR001680 GO:0005515
Gma19g02186 1131 SMART WD40_4 823 859 IPR001680 GO:0005515
Gma19g02186 1131 SMART WD40_4 575 615 IPR001680 GO:0005515
Gma19g02186 1131 SMART WD40_4 529 572 IPR001680 GO:0005515
Gma19g02186 1131 SMART WD40_4 1051 1092 IPR001680 GO:0005515
Gma19g02186 1131 SMART WD40_4 485 526 IPR001680 GO:0005515
Gma19g02186 1131 SMART WD40_4 862 902 IPR001680 GO:0005515
Gma19g02186 1131 SMART WD40_4 905 944 IPR001680 GO:0005515
Gma19g02186 1131 Gene3D - 328 563 IPR015943 GO:0005515
Gma19g02186 1131 MobiDBLite consensus disorder prediction 1112 1131 - -
Gma19g02186 1131 ProSiteProfiles LIS1 homology (LisH) motif profile. 4 36 IPR006594 GO:0005515
Gma19g02186 1131 MobiDBLite consensus disorder prediction 1094 1131 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Gma19g02186 Gma-Chr19 50677464 50686622 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Gma19g02186 448 657 Miscellaneous Gene Families AT5G08390 25.234 3.42e-06 49.3
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Gma19g02186 - - gmx:100808421 2227.21
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Gma19g02186 19 50677464 50686622 Gma19g02186 19 50677464 50686622 ECH
Gma19g02186 19 50677464 50686622 Gma03g02152 03 46968035 46976513 GST
Gma19g02186 19 50677464 50686622 Gma10g01482 10 41928373 41937545 PCT
Gma19g02186 19 50677464 50686622 Gma20g02219 20 49340389 49350377 PCT
Gma10g01482 10 41928373 41937545 Gma19g02186 19 50677464 50686622 PCT
Gma20g02219 20 49340389 49350377 Gma19g02186 19 50677464 50686622 PCT