Gene search
Sequence information
| Select | Gene | Cds | Cds_length | GC_content | Pep | Pep_length |
|---|---|---|---|---|---|---|
| Gma20g01466 | ATGCAAGCTTGTAGATATGGGCATTGGGAGGTTGCACAGACACTTTTACTCTTCAGATGCAATGTTATAAGAGCTGATTATCTTAGTGGGAGGACAGCTCTTCACTTTGCAGCTGTGCATGGGCATGTAAGATGTATTAGACTTGTTGTGGCTGACTTTGTACCAAGTGCACCTTATCAAGCTATACATGCTGGCACAGCTGTTGACAGGGGTGGTGGATCAAATGTGAAAGGCAAACATGAGCATAGTGCCCTTTCCAAGTTTGTAAATAAGACTGCTGATGGAGGAATCACTGCCCTTCATATGGCTGCGTTAAATGGGTACTTTGATTGTGTACAACTGCTGCTTGATCTTAATGCAAATGTGAATGCTGTGACATATAATTATGGCACATCAATGGATTTAATAGGGGCTGGAAGTACTCCATTGCATTATGCTGCTTGTGGAGGCAATTTAAAATGTTGTCAGATCCTTGTTGCACACGGTGCAAGTCGGCTGGCTTTAAATTGCAATGGGTGGCTTCCTCTTGATATTGCTAGGATGTGGGGGCGTCATTGGCTTGAACAATTGCTGGCACCCAGTTCTGATGCCACAATGCCTACATTCTCTCATTCAAATTACTTGTCCTTGCCCCTTATGAGTGTGCTCAACATAGCTAGAGAGTATGGATTGCAATCATCTACAGCCTCCTCTGATGAGATTGACTTTTGTGCTGTATGCCTGGAGAGGCCATGTTCAGTGGCTGCAGAAGGATGTGGGCATGAGCTTTGTGTAAGATGTGCACTCTATCTTTGCTCAACAAACAATGTTTCTTCTGAAATGGTTGGCCCTCCTGGCTCTATCCCTTGCCCCCTATGTAGACATGGAGTTGTCTCTTTTGTTAAGTTGCCAGGTTCCCAAGCAAAAGAAAATAAACTACATGTGTCTCTTGGCCTGTGTACCCCATGCATGCTACATCCACGTGACCTAGACAAGCCATCCCTTTCTCATACACCAGAGGTTGGAAGAAATCGTGTAGCTTCTGTTCCTTCGGAGATACTCTGCCCCGTCACTTGTAGTCCATTTCCATCTATGGCAATTCCCTTATGTACCTGCAATGATGGTCCATGTCCATCATTTGAACCCAGAGAAGTAGAAACACAGGATGGATTACCTCATCACTCTCAAGCATCAACAGTGGATCAGGATAAAATTGAAGGGCCAAGACTAGATAAAACAACCTGCTCTAGCATGTTTTGGGGTAGAAGAAGTTGCAGCAGGGAGCACCAATGCAATTCAGAAATAAATGCTTGA | 1293 | 0.4447 | MQACRYGHWEVAQTLLLFRCNVIRADYLSGRTALHFAAVHGHVRCIRLVVADFVPSAPYQAIHAGTAVDRGGGSNVKGKHEHSALSKFVNKTADGGITALHMAALNGYFDCVQLLLDLNANVNAVTYNYGTSMDLIGAGSTPLHYAACGGNLKCCQILVAHGASRLALNCNGWLPLDIARMWGRHWLEQLLAPSSDATMPTFSHSNYLSLPLMSVLNIAREYGLQSSTASSDEIDFCAVCLERPCSVAAEGCGHELCVRCALYLCSTNNVSSEMVGPPGSIPCPLCRHGVVSFVKLPGSQAKENKLHVSLGLCTPCMLHPRDLDKPSLSHTPEVGRNRVASVPSEILCPVTCSPFPSMAIPLCTCNDGPCPSFEPREVETQDGLPHHSQASTVDQDKIEGPRLDKTTCSSMFWGRRSCSREHQCNSEINA | 430 |
Annotation information
| Select | Seq ID | Length | Analysis | Description | Start | End | IPR | GO |
|---|---|---|---|---|---|---|---|---|
| Gma20g01466 | 430 | Pfam | Ankyrin repeats (3 copies) | 1 | 124 | IPR002110 | GO:0005515 | |
| Gma20g01466 | 430 | Pfam | Ankyrin repeats (3 copies) | 133 | 196 | IPR002110 | GO:0005515 | |
| Gma20g01466 | 430 | ProSitePatterns | Zinc finger RING-type signature. | 252 | 261 | IPR017907 | - | |
| Gma20g01466 | 430 | PANTHER | HOMEOBOX PROTEIN WARIAI | 1 | 430 | - | - | |
| Gma20g01466 | 430 | SUPERFAMILY | Ankyrin repeat | 2 | 192 | IPR036770 | - | |
| Gma20g01466 | 430 | ProSiteProfiles | Ankyrin repeat profile. | 29 | 50 | IPR002110 | GO:0005515 | |
| Gma20g01466 | 430 | PRINTS | Ankyrin repeat signature | 30 | 45 | IPR002110 | GO:0005515 | |
| Gma20g01466 | 430 | PRINTS | Ankyrin repeat signature | 111 | 125 | IPR002110 | GO:0005515 | |
| Gma20g01466 | 430 | ProSiteProfiles | Ankyrin repeat profile. | 138 | 170 | IPR002110 | GO:0005515 | |
| Gma20g01466 | 430 | Gene3D | - | 1 | 63 | IPR036770 | - | |
| Gma20g01466 | 430 | PANTHER | E3 UBIQUITIN-PROTEIN LIGASE XBOS32 | 1 | 430 | - | - | |
| Gma20g01466 | 430 | MobiDBLite | consensus disorder prediction | 376 | 402 | - | - | |
| Gma20g01466 | 430 | SUPERFAMILY | RING/U-box | 231 | 293 | - | - | |
| Gma20g01466 | 430 | Gene3D | - | 74 | 219 | IPR036770 | - | |
| Gma20g01466 | 430 | ProSiteProfiles | Ankyrin repeat region circular profile. | 138 | 164 | - | - | |
| Gma20g01466 | 430 | ProSiteProfiles | Ankyrin repeat region circular profile. | 95 | 124 | - | - | |
| Gma20g01466 | 430 | Gene3D | Zinc/RING finger domain, C3HC4 (zinc finger) | 220 | 309 | IPR013083 | - | |
| Gma20g01466 | 430 | ProSiteProfiles | Ankyrin repeat region circular profile. | 29 | 50 | - | - | |
| Gma20g01466 | 430 | SMART | ANK_2a | 29 | 59 | IPR002110 | GO:0005515 | |
| Gma20g01466 | 430 | SMART | ANK_2a | 138 | 167 | IPR002110 | GO:0005515 | |
| Gma20g01466 | 430 | SMART | ANK_2a | 95 | 124 | IPR002110 | GO:0005515 | |
| Gma20g01466 | 430 | ProSiteProfiles | Ankyrin repeat profile. | 95 | 127 | IPR002110 | GO:0005515 | |
| Gma20g01466 | 430 | ProSiteProfiles | Zinc finger RING-type profile. | 237 | 287 | IPR001841 | - |
Duplication type information
| Select | Gene | Chromosome | Start | End | Duplicated_type |
|---|---|---|---|---|---|
| Gma20g01466 | Gma-Chr20 | 41802054 | 41807016 | Wgd |
Functional genes information
| Select | Gene | Gene_start | Gene_end | Function | Ath_gene | Identity(%) | E-value | Score |
|---|---|---|---|---|---|---|---|---|
| Gma20g01466 | 3 | 198 | Miscellaneous Gene Families | AT2G31820 | 30.097 | 3.16e-08 | 53.9 |
Pathway information
| Select | Query | KO | Definition | Second KO | KEGG Genes ID | GHOSTX Score |
|---|---|---|---|---|---|---|
| Gma20g01466 | K19044 | - | gmx:100785638 | 900.582 |
Event-related genes
| Select | Gene_1 | Chr_1 | Start_1 | End_1 | Gene_2 | Chr_2 | Start_2 | End_2 | Event_name |
|---|---|---|---|---|---|---|---|---|---|
| Gma10g02253 | 10 | 50086061 | 50090228 | Gma20g01466 | 20 | 41802054 | 41807016 | GST | |
| Gma16g01608 | 16 | 36933885 | 36941578 | Gma20g01466 | 20 | 41802054 | 41807016 | PCT | |
| Gma09g01380 | 09 | 37267595 | 37274561 | Gma20g01466 | 20 | 41802054 | 41807016 | PCT | |
| Gma20g01466 | 20 | 41802054 | 41807016 | Gma16g01608 | 16 | 36933885 | 36941578 | PCT | |
| Gma20g01466 | 20 | 41802054 | 41807016 | Gma09g01380 | 09 | 37267595 | 37274561 | PCT |