Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Gma16g01608 ATGGGGAATTCATTTGGGTGTTCGGCTTCCGGCGAGAGGTTGGTGTCGGCGGCGAGGGACGGCGATTTGGTTGAGGCGAAGATGCTTCTGGAATGCAACCCTTGTCTTGCAAAGTACTCAACTTTCGGGGGTCTCAATTCCCCTCTTCATTTTGCAGCTTCCAAGGGCCATAACGAGATTGTGGCATTGTTGCTTGAAAATGGAGCTGATGTGAATTCGAGAAATTACTGTGGGCAGACTGCTTTGATGCAAGCTTGTAGATATGGTCATTGGGAAGTTGTGCAGACCCTTCTGCTCTTCAGATGCAATGTTGTGAAAGCAGATTATCTCAGCGGTAGGACAGCTCTTCACTTTGCAGCCATCAATGGGCATGCAAGATGCATTAGGCTTGTCTTGGCAGATTTTGTTCCAAGTGCTCCTTTTGAAGCTTTACATGCTCGCATAGATGCTGAGGGTGATGGATCAAATGTGAAAAACAAACATGAACAAAGTGTGCTGTCCAAGTTTGTAAACAAAACAGCTGATGCTGGTATTACTGCCCTTCATATGGCTGCATTAAATGGGCACTTTGATTGTGTACAACTGCTACTTGATCTTAATGCAAATGTGTCAGCTGCGACATTTCATTATGGTACATCAATGGATTTAATAGGTAgggctggaagcactccattgcattatgctgcttgtggaggcaatttaaaatgctgtgcaagtcggatggctttgaactgcaatggATGGCTTCCACTTGATGTTGCTCGGATGTGGGGGCGTCATTGGCTTGAACCATTGTTGACACCTACTTCTGATGCCACAATATCATCATTCCCTTCTTCAAATTATTTATCCTTGCCTCTCATGAGTGTGCTCAACATTGCCAGAGAGTGTGGACTGCAATCAACTACAACCTCCTCTAACGAAGTTGATGTTTGTGCTGTTTGCCTGGAGAGGCAATGTTCAGTGGCTGCAGAAGGATGTGGGCATGAGCTTTGTGTAAGATGTGCACTCTATCTTTGCTCAACAAGCAATGTTTCTTCGGAGACGTGTGGGCCTCCTGGCTCTATCCCTTGTCCCCTTTGTAGACATGGAATTATCTCTTTTGTCAAATTACCAGGTTCCCAAGCAAAAGAAAATAAATTACACGTGTCCCTCAGCCTGTGTACCCCATGCATGCTACATCCATGTGACCTAGATCGACCGACTGTTTCTCATACCCCTGAGATTCGAAGAAACCGTGTAGCTTCTGTTCCATCGGAGATGCTTTGCCCTGTCACTTGCACTCCATTTCCATCTGTAGCAATTCCTCTGTGTACATGCAACAATGGTCCTTGTCCATCATTTGAACCCCGGGAAGCAGAAGCACAAGGTGGATCGCCTCTCCACTCGCATGCTTCGATGATGGATCAGGATAAAATGGATGGTCCGAGGCTGGAGAAAACAACATGCTCAGGCATGTTTTGGGGTAGAAGAAGTTGCAGTCGGGAGCATCAATGCAATTCAGAAATAAATGCTTGA 1518 0.4328 MGNSFGCSASGERLVSAARDGDLVEAKMLLECNPCLAKYSTFGGLNSPLHFAASKGHNEIVALLLENGADVNSRNYCGQTALMQACRYGHWEVVQTLLLFRCNVVKADYLSGRTALHFAAINGHARCIRLVLADFVPSAPFEALHARIDAEGDGSNVKNKHEQSVLSKFVNKTADAGITALHMAALNGHFDCVQLLLDLNANVSAATFHYGTSMDLIGRAGSTPLHYAACGGNLKCCASRMALNCNGWLPLDVARMWGRHWLEPLLTPTSDATISSFPSSNYLSLPLMSVLNIARECGLQSTTTSSNEVDVCAVCLERQCSVAAEGCGHELCVRCALYLCSTSNVSSETCGPPGSIPCPLCRHGIISFVKLPGSQAKENKLHVSLSLCTPCMLHPCDLDRPTVSHTPEIRRNRVASVPSEMLCPVTCTPFPSVAIPLCTCNNGPCPSFEPREAEAQGGSPLHSHASMMDQDKMDGPRLEKTTCSGMFWGRRSCSREHQCNSEINA 505
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Gma16g01608 505 Pfam Ankyrin repeat 112 132 IPR002110 GO:0005515
Gma16g01608 505 Gene3D - 4 167 IPR036770 -
Gma16g01608 505 Pfam Ankyrin repeats (many copies) 171 216 IPR002110 GO:0005515
Gma16g01608 505 PANTHER HOMEOBOX PROTEIN WARIAI 1 505 - -
Gma16g01608 505 ProSitePatterns Zinc finger RING-type signature. 327 336 IPR017907 -
Gma16g01608 505 ProSiteProfiles Ankyrin repeat profile. 176 208 IPR002110 GO:0005515
Gma16g01608 505 ProSiteProfiles Ankyrin repeat profile. 44 76 IPR002110 GO:0005515
Gma16g01608 505 ProSiteProfiles Ankyrin repeat profile. 111 132 IPR002110 GO:0005515
Gma16g01608 505 Pfam Ankyrin repeats (many copies) 46 98 IPR002110 GO:0005515
Gma16g01608 505 SMART ANK_2a 176 205 IPR002110 GO:0005515
Gma16g01608 505 SMART ANK_2a 220 251 IPR002110 GO:0005515
Gma16g01608 505 SMART ANK_2a 44 73 IPR002110 GO:0005515
Gma16g01608 505 SMART ANK_2a 111 142 IPR002110 GO:0005515
Gma16g01608 505 SMART ANK_2a 77 106 IPR002110 GO:0005515
Gma16g01608 505 PRINTS Ankyrin repeat signature 192 206 IPR002110 GO:0005515
Gma16g01608 505 PRINTS Ankyrin repeat signature 112 127 IPR002110 GO:0005515
Gma16g01608 505 ProSiteProfiles Ankyrin repeat region circular profile. 176 205 - -
Gma16g01608 505 ProSiteProfiles Ankyrin repeat region circular profile. 111 132 - -
Gma16g01608 505 Gene3D - 168 270 IPR036770 -
Gma16g01608 505 Gene3D Zinc/RING finger domain, C3HC4 (zinc finger) 295 384 IPR013083 -
Gma16g01608 505 MobiDBLite consensus disorder prediction 451 476 - -
Gma16g01608 505 SUPERFAMILY RING/U-box 311 368 - -
Gma16g01608 505 ProSiteProfiles Zinc finger RING-type profile. 312 362 IPR001841 -
Gma16g01608 505 ProSiteProfiles Ankyrin repeat region circular profile. 44 75 - -
Gma16g01608 505 SUPERFAMILY Ankyrin repeat 14 267 IPR036770 -
Gma16g01608 505 PANTHER E3 UBIQUITIN-PROTEIN LIGASE XBOS32 1 505 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Gma16g01608 Gma-Chr16 36933885 36941578 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Gma16g01608 17 266 Miscellaneous Gene Families AT5G02620 28.571 1.26e-15 77.8
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Gma16g01608 K19044 - gmx:100812809 1041.57
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Gma16g01608 16 36933885 36941578 Gma09g01380 09 37267595 37274561 GST
Gma16g01608 16 36933885 36941578 Gma10g02253 10 50086061 50090228 PCT
Gma16g01608 16 36933885 36941578 Gma20g01466 20 41802054 41807016 PCT
Gma10g02253 10 50086061 50090228 Gma16g01608 16 36933885 36941578 PCT
Gma20g01466 20 41802054 41807016 Gma16g01608 16 36933885 36941578 PCT