Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Gma10g02253 ATGGGGAATTCGTTCGGATGTTCGGCCTCCGGCGAGAGGCTTGTGTCGGCGGCGAGGGACGGCGACTTGGTGGAAGCGCAGATGCTTCTGAACTGCAACCCGTGTCTCGCCAAGTATTCTACTTTCGGTGGCCTCAATTCCCCTCTCCATTTTGCAGCTGCCAAAGGCCACAACGAGATTGTGGCATTGTTGCTGGAGAATGGAGCTGATGTGAATTCCAGAAATTATTGTGGCCAGACGGCGTTGATGCAAGCTTGTAGATATGGGCATTGGGAGGTTGTACAAACACTTCTACTCTTCAGATGCAATGTTATGAGAGCTGATTATCTTAGTGGGAGGACAGCTCTTCACTTTGCAGCTGTGCATGGGCATGTAAGATGTATTAGACTTGTTGTGGCTGACTTTGTACCAAGTGCACTTTATCAAGCTATACATGCTGGCACAGATGTTGACAGGGGTGGTGGATCAAATGCGAAAGGGAAACATGAGCAAAGTGCCCTGTCCAAGTTTATAAATAAAACCGCTGATGGAGGTATCACTGCCCTTCATATGGCTGCACTAAATGGGTACTTTGATTGTGTACAACTGCTGCTTGATCTTAATGCAAATGTGAATGCTGTGACTTATCATTATGGAACATCAATGGATTTAATAGgggctggaagtactccattgcattatggtgcttgtggaggcaatttaaaatgttgtcaggcaagaattgctttaatccttgttgcacgaggtgcaagtcgtctggctttaaattgcaatggGTGGCTTCCTCTTGATATTGCTAGGATGTGGGGGCGTCATTGGCTTGAACAATTGCTGGCACCCAGTTCTGATGCCTCAATACCTACATTCTCTCATTCAAATTACTTGTCCTTGCCCCTTATGAGTGTGCTCAACATAGCTAGAGAGTATGGATTGCAATCATCTCCAACATCCTCTGATGAGATTGACTTTTGTGCTGTATGCCTGGAGAGGCCGTGTTCAGTGGCTGCAGAAGGATGTGGGCATGAGCTTTGTGTAAGATGTGCACTCTATCTTTGCTCAACAAACAATGTTTCTTCTGAAATGCTTGGCCCTCCTGGCTCTATCCCTTGCCCCCTATGTAGACATGGAGTTGTCTCTTTTGTTAAGTTGCCAGGTTCCCAAGCAAAAGAAAATAAATTACACGTGTCTCTTGGCCTGTGTACCCCATGCATATTACATCCACGTGACCTAGACCAGCCATCCCTTTCTCATACACCAGAGATTGGAAGAAATCGTGTAGCTTCTGTTCCTTCGGAGATACGCTGCCCCGTCACTTGCAGTCCATTTCCATCTATGGCAATTCCCTTATGTACCTGCAATGATGGTCCATGTCCATCATTTGAACCTGGAGAAGTAGAAACACAAGATGGATCACCTCATCACTCTCAAGCATCAACAGTGGATCAGGATAAAATCGAAGGGCCAAGACTGGATAAAACAACCTGCTCTAGCATGTTTTGGGGTAGAAGAAGTTGCAGCAGGGAGCACCAATGCAATTCAGAAATAAATGCTTGA 1554 0.4254 MGNSFGCSASGERLVSAARDGDLVEAQMLLNCNPCLAKYSTFGGLNSPLHFAAAKGHNEIVALLLENGADVNSRNYCGQTALMQACRYGHWEVVQTLLLFRCNVMRADYLSGRTALHFAAVHGHVRCIRLVVADFVPSALYQAIHAGTDVDRGGGSNAKGKHEQSALSKFINKTADGGITALHMAALNGYFDCVQLLLDLNANVNAVTYHYGTSMDLIGAGSTPLHYGACGGNLKCCQARIALILVARGASRLALNCNGWLPLDIARMWGRHWLEQLLAPSSDASIPTFSHSNYLSLPLMSVLNIAREYGLQSSPTSSDEIDFCAVCLERPCSVAAEGCGHELCVRCALYLCSTNNVSSEMLGPPGSIPCPLCRHGVVSFVKLPGSQAKENKLHVSLGLCTPCILHPRDLDQPSLSHTPEIGRNRVASVPSEIRCPVTCSPFPSMAIPLCTCNDGPCPSFEPGEVETQDGSPHHSQASTVDQDKIEGPRLDKTTCSSMFWGRRSCSREHQCNSEINA 517
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Gma10g02253 517 PANTHER HOMEOBOX PROTEIN WARIAI 1 517 - -
Gma10g02253 517 SUPERFAMILY RING/U-box 318 380 - -
Gma10g02253 517 Gene3D - 167 283 IPR036770 -
Gma10g02253 517 ProSiteProfiles Ankyrin repeat profile. 177 209 IPR002110 GO:0005515
Gma10g02253 517 SUPERFAMILY Ankyrin repeat 15 279 IPR036770 -
Gma10g02253 517 PANTHER E3 UBIQUITIN-PROTEIN LIGASE XBOS32 1 517 - -
Gma10g02253 517 ProSitePatterns Zinc finger RING-type signature. 339 348 IPR017907 -
Gma10g02253 517 Gene3D Zinc/RING finger domain, C3HC4 (zinc finger) 308 397 IPR013083 -
Gma10g02253 517 ProSiteProfiles Ankyrin repeat region circular profile. 44 75 - -
Gma10g02253 517 PRINTS Ankyrin repeat signature 112 127 IPR002110 GO:0005515
Gma10g02253 517 PRINTS Ankyrin repeat signature 193 207 IPR002110 GO:0005515
Gma10g02253 517 Pfam Ankyrin repeats (many copies) 172 217 IPR002110 GO:0005515
Gma10g02253 517 ProSiteProfiles Ankyrin repeat region circular profile. 177 206 - -
Gma10g02253 517 ProSiteProfiles Ankyrin repeat profile. 111 132 IPR002110 GO:0005515
Gma10g02253 517 ProSiteProfiles Ankyrin repeat profile. 44 76 IPR002110 GO:0005515
Gma10g02253 517 Pfam Ankyrin repeats (many copies) 46 98 IPR002110 GO:0005515
Gma10g02253 517 ProSiteProfiles Ankyrin repeat region circular profile. 111 132 - -
Gma10g02253 517 SMART ANK_2a 44 73 IPR002110 GO:0005515
Gma10g02253 517 SMART ANK_2a 111 141 IPR002110 GO:0005515
Gma10g02253 517 SMART ANK_2a 77 106 IPR002110 GO:0005515
Gma10g02253 517 SMART ANK_2a 220 254 IPR002110 GO:0005515
Gma10g02253 517 SMART ANK_2a 177 206 IPR002110 GO:0005515
Gma10g02253 517 ProSiteProfiles Zinc finger RING-type profile. 324 374 IPR001841 -
Gma10g02253 517 MobiDBLite consensus disorder prediction 463 489 - -
Gma10g02253 517 Gene3D - 4 166 IPR036770 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Gma10g02253 Gma-Chr10 50086061 50090228 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Gma10g02253 3 240 Miscellaneous Gene Families AT3G12360 29.921 6.66e-13 69.3
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Gma10g02253 K19044 - gmx:100793886 1059.67
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Gma10g02253 10 50086061 50090228 Gma10g02253 10 50086061 50090228 ECH
Gma10g02253 10 50086061 50090228 Gma20g01466 20 41802054 41807016 GST
Gma16g01608 16 36933885 36941578 Gma10g02253 10 50086061 50090228 PCT
Gma09g01380 09 37267595 37274561 Gma10g02253 10 50086061 50090228 PCT
Gma10g02253 10 50086061 50090228 Gma16g01608 16 36933885 36941578 PCT
Gma10g02253 10 50086061 50090228 Gma09g01380 09 37267595 37274561 PCT