Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Gma09g01380 ATGGGGAATTCATTTGGGTGTTCGGCTTCCGGCGAGAGGTTGGTGTCGGCGGCGAGGGACGGCGATTTGGTTGAGGCGAAGATGCTTCTGGAATGCAACCCTTGTCTTGCAAAGTACTCAACTTTCGGGGGTCTCAATTCCCCTCTTCATTTTGCAGCTTCCAAGGGCCATAACGAGGTTTCAATTCTCAATCTCAATCACTTCTTTTTTTTTTTTCGTTTTTTTCATTTTGGTGAGTTTCTGTTTTTACCGACCGCTTTGATGCAAGCTTGTAGATATGGACATTGGGAAGTTGTACAGACCCTTCTGCTCTTCAAATGCAATGTTATGAAAGCAGATTATCTCAGCGGGAGGACAGCTCTTCACTTTGCAGCCATCAATGGGCATGCAAGATGCATTAGGCTTGTTGTGGCGGATTTTGTTCCAAGTGCTCCGTTTGAAGCATTACATGCTCACATGGTTGCTGAGGGTGATGCATCAAATGTGAAAAACAAATATGAACAAAGTGCGCTGTCCAAGTTTATAAACAAAACAGCTGATGCTGGTATCACTGCCCTTCATATGGCTGCATTAAATGGGTACTTTGATTGTGTACAACTGCTACTTGATCTTAGTGCTAATGTGTCAGCTGCAACATTTCATTATGGAACATCAATGGATTTAATAGGTGCTGGAAGCACTCCATTGCATTATGCTGCTTGTGGAGGCAATTTAAAATGCTGTCAGGCAAGAATTGCTTCAACTTTGATATGGCTTCCACTTGATGTTGCTAGGATGTGGGGGCGCCATTGGCTTGAACCTTTGTTGACACCTACTTCTGATGCCACAATATCATCATTCCCTTCTTCAAATTATTTATCCCTTCCTCTCATGAGTGTGCTCAACATTGCCAGAGAGTGTGGACTGCAATCAACTACAACCTCCTCTAACGAAGTTGATGCTTGTGCTGTCTGCCTGGAGAGACAATGTTCTGTGGCTGCAGAAGGATGTGGGCATGAGCTTTGTGTAAGATGTGCACTCTATCTTTGCTCAACAAGCAATGTTTCTTCTGAAACGGGTGGGCCTCCTGGTTCTATCCCTTGTCCCCTTTGTAGACATGGAATTGTCTCTTTTGTCAAATTATCAGGTTCCAAAGCAAAAGAAAATAAATTACATGTGTCCCTCAGCTTGTGTACCCCTTGCATGCTACATCCACGTGACCTAGATCGACCGTCTCTTTCTCTTACCCCCGAGATTCGAAGAAACCGTGTAGCTTCTGTTCCGTCGGAGATGCTTTGCCCCGTCACTTGTACTCCATTTCCATCTGTAGCAATTCCTCTGTGTACATGCAATGATGGTCCTTGTCCATCATTTGAACCCCGGGAAGCAGAAGCACAAGATGGATCACCTCGCCACTCACAAGCTGCGATGATGGATCAGAATAAAATGGATGGTCCGAGGCTGGAGAAAATGACATGCTCAGGCATGTTTTGGGGTAGAAGAAGTTGCAGCAGGGAGCATCAATGCAATTCAGAAATAAATGCTTGA 1527 0.4479 MGNSFGCSASGERLVSAARDGDLVEAKMLLECNPCLAKYSTFGGLNSPLHFAASKGHNEVSILNLNHFFFFFRFFHFGEFLFLPTALMQACRYGHWEVVQTLLLFKCNVMKADYLSGRTALHFAAINGHARCIRLVVADFVPSAPFEALHAHMVAEGDASNVKNKYEQSALSKFINKTADAGITALHMAALNGYFDCVQLLLDLSANVSAATFHYGTSMDLIGAGSTPLHYAACGGNLKCCQARIASTLIWLPLDVARMWGRHWLEPLLTPTSDATISSFPSSNYLSLPLMSVLNIARECGLQSTTTSSNEVDACAVCLERQCSVAAEGCGHELCVRCALYLCSTSNVSSETGGPPGSIPCPLCRHGIVSFVKLSGSKAKENKLHVSLSLCTPCMLHPRDLDRPSLSLTPEIRRNRVASVPSEMLCPVTCTPFPSVAIPLCTCNDGPCPSFEPREAEAQDGSPRHSQAAMMDQNKMDGPRLEKMTCSGMFWGRRSCSREHQCNSEINA 508
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Gma09g01380 508 ProSitePatterns Zinc finger RING-type signature. 330 339 IPR017907 -
Gma09g01380 508 Pfam Ankyrin repeats (3 copies) 87 209 IPR002110 GO:0005515
Gma09g01380 508 Gene3D - 7 141 IPR036770 -
Gma09g01380 508 Pfam Ankyrin repeat 225 249 IPR002110 GO:0005515
Gma09g01380 508 ProSiteProfiles Ankyrin repeat region circular profile. 181 210 - -
Gma09g01380 508 Gene3D - 146 247 IPR036770 -
Gma09g01380 508 ProSiteProfiles Zinc finger RING-type profile. 315 365 IPR001841 -
Gma09g01380 508 SMART ANK_2a 44 73 IPR002110 GO:0005515
Gma09g01380 508 SMART ANK_2a 181 210 IPR002110 GO:0005515
Gma09g01380 508 SMART ANK_2a 116 147 IPR002110 GO:0005515
Gma09g01380 508 SMART ANK_2a 82 111 IPR002110 GO:0005515
Gma09g01380 508 SMART ANK_2a 224 254 IPR002110 GO:0005515
Gma09g01380 508 Gene3D Zinc/RING finger domain, C3HC4 (zinc finger) 298 388 IPR013083 -
Gma09g01380 508 PANTHER E3 UBIQUITIN-PROTEIN LIGASE XBOS32 1 508 - -
Gma09g01380 508 MobiDBLite consensus disorder prediction 454 473 - -
Gma09g01380 508 PRINTS Ankyrin repeat signature 117 132 IPR002110 GO:0005515
Gma09g01380 508 PRINTS Ankyrin repeat signature 197 211 IPR002110 GO:0005515
Gma09g01380 508 ProSiteProfiles Ankyrin repeat profile. 116 137 IPR002110 GO:0005515
Gma09g01380 508 PANTHER HOMEOBOX PROTEIN WARIAI 1 508 - -
Gma09g01380 508 SUPERFAMILY Ankyrin repeat 14 263 IPR036770 -
Gma09g01380 508 SMART ring_2 315 364 IPR001841 -
Gma09g01380 508 SUPERFAMILY RING/U-box 308 370 - -
Gma09g01380 508 ProSiteProfiles Ankyrin repeat region circular profile. 116 137 - -
Gma09g01380 508 ProSiteProfiles Ankyrin repeat profile. 181 213 IPR002110 GO:0005515
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Gma09g01380 Gma-Chr9 37267595 37274561 Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Gma09g01380 3 244 Miscellaneous Gene Families AT3G12360 29.482 7.26e-10 59.7
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Gma09g01380 K19044 - gmx:100784143 976.852
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Gma16g01608 16 36933885 36941578 Gma09g01380 09 37267595 37274561 GST
Gma09g01380 09 37267595 37274561 Gma10g02253 10 50086061 50090228 PCT
Gma09g01380 09 37267595 37274561 Gma20g01466 20 41802054 41807016 PCT
Gma10g02253 10 50086061 50090228 Gma09g01380 09 37267595 37274561 PCT
Gma20g01466 20 41802054 41807016 Gma09g01380 09 37267595 37274561 PCT