Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Gma20g00893 ATGATGGCTAACCATACCATGAAGATGGCCAACTTGTTGCTTCTCGTGACTTTGGCTCAGCTCTTAGCCACCGCAATCTCATCAGATCCTGACCTTCTTCAAGACCTCTGTGTCGCCGACCTTGCCTCAGGTGTGAAAGTGAATGGATTCACTTGCAAAGAAGCATCCAAGGTAAATGCCTCAGATTTCTTCTCAAACATACTAGCCAAACCAGGAGCCACCAACAACACATTTGGCTCCTTGGTGACTGGAGCCAACGTTCAGAAAGTCCCAGGACTCAACACACTTGGTGTCTCTCTGTCAAGAATTGACTATGCCCCAGGTGGCATCAACCCCCCTCACACCCACCCACGTGCCACAGAGCTTGTGTTTGTCCTTGAAGGCCAACTATATGTGGGATTCATAACCACATCTAATGTGCTCATATCAAAGACCATTAACAAGGGTGACATATTTGTGTTCCCAAAAGGCTTGCTTCACTTCCAAAAGAACAATGCTAAGGTTCCTGCTGCTGTGATTTCAGCCTTCAATAGCCAACTTCCAGGGACACAGTCCACTGCTACAACCTTGTTTGCTGCCACTCCATCTGTTCCAGACCATGTCTTGACCCAGACCTTCCAGGTTGGAACCAAGGAGGTTCAGAAAATCAAGTCTAGACTTGCACCAAAAAAGTAA 675 0.4726 MMANHTMKMANLLLLVTLAQLLATAISSDPDLLQDLCVADLASGVKVNGFTCKEASKVNASDFFSNILAKPGATNNTFGSLVTGANVQKVPGLNTLGVSLSRIDYAPGGINPPHTHPRATELVFVLEGQLYVGFITTSNVLISKTINKGDIFVFPKGLLHFQKNNAKVPAAVISAFNSQLPGTQSTATTLFAATPSVPDHVLTQTFQVGTKEVQKIKSRLAPKK 224
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Gma20g00893 224 ProSitePatterns Germin family signature. 109 122 IPR019780 GO:0030145
Gma20g00893 224 PANTHER GERMIN-LIKE PROTEIN SUBFAMILY 3 MEMBER 3 14 221 - -
Gma20g00893 224 Gene3D Jelly Rolls 28 222 IPR014710 -
Gma20g00893 224 Pfam Cupin 68 214 IPR006045 -
Gma20g00893 224 SUPERFAMILY RmlC-like cupins 29 219 IPR011051 -
Gma20g00893 224 SMART Cupin_1_3 65 214 IPR006045 -
Gma20g00893 224 PRINTS Germin signature 114 134 IPR001929 GO:0030145
Gma20g00893 224 PRINTS Germin signature 144 164 IPR001929 GO:0030145
Gma20g00893 224 PRINTS Germin signature 177 192 IPR001929 GO:0030145
Gma20g00893 224 CDD cupin_OxOx 29 220 - -
Gma20g00893 224 PANTHER GERMIN-LIKE PROTEIN SUBFAMILY 2 MEMBER 4 14 221 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Gma20g00893 Gma-Chr20 35302127 35304071 Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Gma20g00893 7 224 Miscellaneous Gene Families AT3G05930 55.251 6.61e-88 257
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Gma20g00893 - - gmx:100791828 431.795
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Gma20g00893 20 35302127 35304071 Gma20g00893 20 35302127 35304071 ECH
Gma10g01402 10 40873558 40875379 Gma20g00893 20 35302127 35304071 GST
Gma19g02130 19 50189375 50193235 Gma20g00893 20 35302127 35304071 PCT
Gma03g02094 03 46474228 46476166 Gma20g00893 20 35302127 35304071 PCT
Gma20g00893 20 35302127 35304071 Gma19g02130 19 50189375 50193235 PCT
Gma20g00893 20 35302127 35304071 Gma03g02094 03 46474228 46476166 PCT