Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Gma19g02130 ATGAAGCTCACAGGTTTCCTGCAAGCGGTGACTCTAACTGCTTTGGTGTTATCCATCTTCACTGCATCAGATCCCGATTCTCTTCAAGACCTCTGTGTCGCAGACCTTGCCTCAGCGGTTAAAGTGAATGGATTCACCTGCAAAGATGCTGGCAAGGTAAATGCGAGTGATTTCTTCTCAGACATACTAGCCAAACCAGGTGCCACAAACAACACGTATGGCTCCCTAGTGACTGGAGCCAACGTTCAGAAAATCCCAGGACTCAACACCCTTGGCGTGTCTTTGTCACGCATTGACTATGCCCCAGGTGGCATCAACCCACCTCACACGCACCCACGTGCGACCGAAGTAGTGTTCGTGCTTGAAGGAACACTAGATGTTGGGTTCATAACCACAGCCAATGTGCTCATTTCAAAGGCCATCAACAAGGGTGAGATATTTGTGTTCCCAAAGGGCTTAGTTCACTTCCAAAAGAACAATGGAAAGGAACCTGCTTCAGTTATTGCAGCATTCAATAGTCAGTTGCCTGGCACACAGTCCATTGCTCTAACCTTGTTTGCAGCCACACCACCACTTCCGGATAATGTGTTAACCAAGGCTTTCCAGGAGACTTCTTCTGCTCGGTACATATTGCAGCATTACATTGCTGCTAGTGGAAGGCAGAGGCTTCAGAATTCAATTAACAATGCGTATGCCATGTCTTGGCAGCACCAAGGTAGGTTCACGCCCTGGTGCTCACGCGCCTGA 747 0.4873 MKLTGFLQAVTLTALVLSIFTASDPDSLQDLCVADLASAVKVNGFTCKDAGKVNASDFFSDILAKPGATNNTYGSLVTGANVQKIPGLNTLGVSLSRIDYAPGGINPPHTHPRATEVVFVLEGTLDVGFITTANVLISKAINKGEIFVFPKGLVHFQKNNGKEPASVIAAFNSQLPGTQSIALTLFAATPPLPDNVLTKAFQETSSARYILQHYIAASGRQRLQNSINNAYAMSWQHQGRFTPWCSRA 248
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Gma19g02130 248 ProSitePatterns Germin family signature. 104 117 IPR019780 GO:0030145
Gma19g02130 248 Gene3D Jelly Rolls 23 215 IPR014710 -
Gma19g02130 248 PRINTS Germin signature 172 187 IPR001929 GO:0030145
Gma19g02130 248 PRINTS Germin signature 109 129 IPR001929 GO:0030145
Gma19g02130 248 PRINTS Germin signature 139 159 IPR001929 GO:0030145
Gma19g02130 248 SMART Cupin_1_3 60 209 IPR006045 -
Gma19g02130 248 PANTHER GERMIN-LIKE PROTEIN SUBFAMILY 3 MEMBER 3 17 203 - -
Gma19g02130 248 PANTHER GERMIN-LIKE PROTEIN 17 203 - -
Gma19g02130 248 SUPERFAMILY RmlC-like cupins 24 204 IPR011051 -
Gma19g02130 248 Pfam Cupin 63 205 IPR006045 -
Gma19g02130 248 CDD cupin_OxOx 24 202 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Gma19g02130 Gma-Chr19 50189375 50193235 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Gma19g02130 15 201 Miscellaneous Gene Families AT3G05930 60.106 1.80e-79 236
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Gma19g02130 - - gmx:100791628 396.741
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Gma19g02130 19 50189375 50193235 Gma19g02130 19 50189375 50193235 ECH
Gma19g02130 19 50189375 50193235 Gma03g02094 03 46474228 46476166 GST
Gma19g02130 19 50189375 50193235 Gma10g01402 10 40873558 40875379 PCT
Gma19g02130 19 50189375 50193235 Gma20g00893 20 35302127 35304071 PCT
Gma10g01402 10 40873558 40875379 Gma19g02130 19 50189375 50193235 PCT
Gma20g00893 20 35302127 35304071 Gma19g02130 19 50189375 50193235 PCT