Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Gma10g01402 ATGGCTAACCATACCATGAAGCTGGTCAACTTGCTGCTTCTCGTGACTTTGGCTCAGCTCTTAGCCACCGCTATCTCTTCAGATCCTGACCTTCTTCAAGACCTCTGTGTCGCCGACCTTGCCTCAGGTGTGAAAGTGAATGGATTTACCTGCAAAGAAGCAACCAAGGTAAATGCCTCAGATTTCTTTTCCAACACACTAGCCAAACCAGGAGCCACAAACAACACCTTTGGTTCCTTGGTGACTGGAGCCAACGTTCAGAAAGTCCCAGGACTCAACACACTCGGTGTCTCTCTGTCAAGAATTGACTATGCCCCAGGTGGCATAAACCCCCCTCACACCCACCCACGTGCCACTGAGATTGTGTTTGTCCTTGAAGGCCAACTAGATGTGGGGTTCATAACCACATCCAATGTGCTCATATCAAAGACCATTAACAAGGGTGACATATTTGTGTTCCCAAAAGGCTTGCTTCACTTCCAAAAGAACAATGCTAAGGTTTCTGCTTCTGTGATTTCAGCCTTCAATAGCCAACTTCCAGGGACACAGTCCATTGCTACAACCTTGTTTGCTGCCACTCCATCTGTTCCAGACCATGTCCTGACCCAGACCTTCCAGGTTGGAACCAAGGAGGTTCAGAAAATCAAGTCTAGGCTTGCACCAAAAAAGTAA 672 0.4762 MANHTMKLVNLLLLVTLAQLLATAISSDPDLLQDLCVADLASGVKVNGFTCKEATKVNASDFFSNTLAKPGATNNTFGSLVTGANVQKVPGLNTLGVSLSRIDYAPGGINPPHTHPRATEIVFVLEGQLDVGFITTSNVLISKTINKGDIFVFPKGLLHFQKNNAKVSASVISAFNSQLPGTQSIATTLFAATPSVPDHVLTQTFQVGTKEVQKIKSRLAPKK 223
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Gma10g01402 223 SMART Cupin_1_3 65 213 IPR006045 -
Gma10g01402 223 Pfam Cupin 67 213 IPR006045 -
Gma10g01402 223 SUPERFAMILY RmlC-like cupins 28 218 IPR011051 -
Gma10g01402 223 CDD cupin_OxOx 28 219 - -
Gma10g01402 223 ProSitePatterns Germin family signature. 108 121 IPR019780 GO:0030145
Gma10g01402 223 PANTHER GERMIN-LIKE PROTEIN 16 221 - -
Gma10g01402 223 Gene3D Jelly Rolls 27 221 IPR014710 -
Gma10g01402 223 PRINTS Germin signature 113 133 IPR001929 GO:0030145
Gma10g01402 223 PRINTS Germin signature 143 163 IPR001929 GO:0030145
Gma10g01402 223 PRINTS Germin signature 176 191 IPR001929 GO:0030145
Gma10g01402 223 PANTHER GERMIN-LIKE PROTEIN SUBFAMILY 3 MEMBER 3 16 221 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Gma10g01402 Gma-Chr10 40873558 40875379 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Gma10g01402 13 223 Miscellaneous Gene Families AT3G05930 56.604 4.78e-86 252
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Gma10g01402 - - gmx:100817475 421.779
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Gma10g01402 10 40873558 40875379 Gma10g01402 10 40873558 40875379 ECH
Gma10g01402 10 40873558 40875379 Gma20g00893 20 35302127 35304071 GST
Gma19g02130 19 50189375 50193235 Gma10g01402 10 40873558 40875379 PCT
Gma03g02094 03 46474228 46476166 Gma10g01402 10 40873558 40875379 PCT
Gma10g01402 10 40873558 40875379 Gma19g02130 19 50189375 50193235 PCT
Gma10g01402 10 40873558 40875379 Gma03g02094 03 46474228 46476166 PCT