Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Gma03g02094 ATGAAGCTCACAGGTTTCCTGCAAGCGGTGACTCTTGCTTTGGTGTTAGCCACCGTCTCTGCATCAGATCCTGATCCTCTTCAAGACCTCTGTGTCGCAGACCTTGCTTCAGCGGTTAAAGTGAATGGATTCACATGCAAAGATGCTGCCAAGGTAAATGCGAGTGATTTCTTCTCAGACATACTAGCCAAACCAGGTGCCACAAACAACACCTATGGCTCCCTAGTGACTGGAGCCAACGTTCAGAAAATCCCAGGACTCAACACCCTTGGCGTGTCTTTATCACGCATTGACTATGCCCCAGGTGGCATCAACCCACCTCACACGCACCCACGTGCCACCGAGGTAGTGTTTGTGCTTGAAGGAACACTAGATGTTGGGTTCATAACCACAGCCAACGTGCTCATATCAAAGAGCATAAGCAAGGGTGAAATATTTGTGTTCCCAAAAGGGTTGGTTCACTTCCAAAAGAACAATGGAAAGGAACAAGCTTCAGTGATTGCAGCATTCAACAGTCAATTGCCTGGCACACAGTCCATTGCTCTAACGTTGTTTGCAGCGACGCCACCGGTTCCAGACAATGTGTTAACCAAGGCGTTCCAGGTGGGTACCAAGGAGGTTGAGAAAATTAAGTCTAGGCTTGCTCCTAAGAAATAA 657 0.481 MKLTGFLQAVTLALVLATVSASDPDPLQDLCVADLASAVKVNGFTCKDAAKVNASDFFSDILAKPGATNNTYGSLVTGANVQKIPGLNTLGVSLSRIDYAPGGINPPHTHPRATEVVFVLEGTLDVGFITTANVLISKSISKGEIFVFPKGLVHFQKNNGKEQASVIAAFNSQLPGTQSIALTLFAATPPVPDNVLTKAFQVGTKEVEKIKSRLAPKK 218
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Gma03g02094 218 Coils Coil 217 218 - -
Gma03g02094 218 ProSitePatterns Germin family signature. 103 116 IPR019780 GO:0030145
Gma03g02094 218 PANTHER GERMIN-LIKE PROTEIN 13 216 - -
Gma03g02094 218 SUPERFAMILY RmlC-like cupins 23 213 IPR011051 -
Gma03g02094 218 PRINTS Germin signature 108 128 IPR001929 GO:0030145
Gma03g02094 218 PRINTS Germin signature 138 158 IPR001929 GO:0030145
Gma03g02094 218 PRINTS Germin signature 171 186 IPR001929 GO:0030145
Gma03g02094 218 SMART Cupin_1_3 59 208 IPR006045 -
Gma03g02094 218 PANTHER GERMIN-LIKE PROTEIN SUBFAMILY 3 MEMBER 3 13 216 - -
Gma03g02094 218 CDD cupin_OxOx 23 214 - -
Gma03g02094 218 Pfam Cupin 62 207 IPR006045 -
Gma03g02094 218 Gene3D Jelly Rolls 22 216 IPR014710 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Gma03g02094 Gma-Chr3 46474228 46476166 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Gma03g02094 10 218 Miscellaneous Gene Families AT3G05930 58.095 7.84e-87 254
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Gma03g02094 - - gmx:100302722 414.846
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Gma19g02130 19 50189375 50193235 Gma03g02094 03 46474228 46476166 GST
Gma03g02094 03 46474228 46476166 Gma10g01402 10 40873558 40875379 PCT
Gma03g02094 03 46474228 46476166 Gma20g00893 20 35302127 35304071 PCT
Gma10g01402 10 40873558 40875379 Gma03g02094 03 46474228 46476166 PCT
Gma20g00893 20 35302127 35304071 Gma03g02094 03 46474228 46476166 PCT