Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Gma19g02028 ATGCAACTGTTCCTGCACTCGATTCAGAACTTTCTTGCGCCATTTCAGTTTCAACTTGTTGCACACATGAAGGGGCTAGTGGCAGTGCTTTTACTTGTAGCAATAAGCACTGCCGTGGAAAGCAATGGGGAAGACAATGGTGGACCATGTAAACAGAATGCATTGAAGGCTAGACCTCACAGTGTGTCGATCTTGGAGTTTGGGGCGGTTGGAGACGGAATAACACTGAACACAGTTGCGTTCGAAAATGCAATATTTTATCTCAAGTCATTTGCTGACAAAGGTGGTGCCCAACTATATGTTCCTTCTGGCACATGGCTAACTGGGAGTTTTAATCTCACCAATCACCTCACTTTGTTCCTTGAGAGAGGAGCTACCATCATTGCATCTCAGgattattctcattgggatatagtggatttcctcccttcttatgGCAGAGGAATTGGGAGATATCGCAGCTTGATCTATGGGCAGAATTTAAGCGATGTGGTAATAACAGGTGATAATGGAACTATAGATGGGCAAGGCTCCATCTGGTGGAAGCTGTTCAATTCTAATTCCTTAAATTACACTCGACCAAATCTTATAGAATTTGTTGATTCTGTTGATGTCATAATTTCCAATTTGACATTTCTAGACTCTCCTGCTTGGGGCATCCATCCAGTATATTGCAGCAACGTTCAAATTCAAAACATAACTTATCGTGCACCAGCCGAATTCCCTTACACAAGTGGTATAGTTCCAGATTCTTCTCAGAATGTATGCATTGAGAACAGTAACATTAGCACTGGTCATGATGCAATTGTTCTGAAGAGTGGTTGGGATCAGTATGGCATTGCCTATGGAAAACCAACCTCAAATGTTCACATCAGTAATGTTTACCTACAATCATCATCAGGTGCTGGCTTGGCATTTGGAAGTGAGATGTCTGGGGGAATATCTGTTATTATTGCAGAAAAGCTTCATATTCTCAACTCTCCTATTGGCATTGAACTGAAGACAACTAGGGGTAGAGGTGGCTATATGAGAGGCATCTTCATTTCTGATGCAGAATTGGAAAATATTAGCTTGGGAATAAGCATGACAGGATACTCCGGTTTCCATCCAGATGACAAGTATGACACTAGTTCACTTCCAGTTGTTGGTGACATTACTTTCAAGAATGTGATTGGGGCAAATATTAGTGTTGCTGGGAATTTTTCAGGAATAGTTGAATCACCATTCTCAACAATCTGTCTTTCAAACGTGACTTTTTCTCTCAGCTCCGAGCCATCTCCTTCATGGTTCTGTTCTAATGTAATTGGTTTCTCTGAGCATGTGATTCCTGAGCCATGTCCTGATATCCAGAGCTCGTATTCCAAGTTTCCCTTTTCTTGCTTTTCTTCTCTATATCCACTCTTTAATAATGTCTCAGGCCATTTGGATCATCAACCACAAGAATTATAG 1449 0.4023 MQLFLHSIQNFLAPFQFQLVAHMKGLVAVLLLVAISTAVESNGEDNGGPCKQNALKARPHSVSILEFGAVGDGITLNTVAFENAIFYLKSFADKGGAQLYVPSGTWLTGSFNLTNHLTLFLERGATIIASQDYSHWDIVDFLPSYGRGIGRYRSLIYGQNLSDVVITGDNGTIDGQGSIWWKLFNSNSLNYTRPNLIEFVDSVDVIISNLTFLDSPAWGIHPVYCSNVQIQNITYRAPAEFPYTSGIVPDSSQNVCIENSNISTGHDAIVLKSGWDQYGIAYGKPTSNVHISNVYLQSSSGAGLAFGSEMSGGISVIIAEKLHILNSPIGIELKTTRGRGGYMRGIFISDAELENISLGISMTGYSGFHPDDKYDTSSLPVVGDITFKNVIGANISVAGNFSGIVESPFSTICLSNVTFSLSSEPSPSWFCSNVIGFSEHVIPEPCPDIQSSYSKFPFSCFSSLYPLFNNVSGHLDHQPQEL 482
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Gma19g02028 482 PANTHER POLYGALACTURONASE-RELATED 27 466 - -
Gma19g02028 482 PANTHER PECTIN LYASE-RELATED 27 466 - -
Gma19g02028 482 Gene3D - 50 437 IPR012334 -
Gma19g02028 482 Pfam Glycosyl hydrolases family 28 153 434 IPR000743 GO:0004650|GO:0005975
Gma19g02028 482 SUPERFAMILY Pectin lyase-like 49 448 IPR011050 -
Gma19g02028 482 SMART pbh1 343 364 IPR006626 -
Gma19g02028 482 SMART pbh1 252 273 IPR006626 -
Gma19g02028 482 SMART pbh1 286 308 IPR006626 -
Gma19g02028 482 SMART pbh1 202 224 IPR006626 -
Gma19g02028 482 SMART pbh1 225 251 IPR006626 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Gma19g02028 Gma-Chr19 49230155 49233294 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Gma19g02028 23 462 Glycoside Hydrolase AT3G16850 59.775 0.0 533
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Gma19g02028 - - gmx:100815184 978.393
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Gma19g02028 19 49230155 49233294 Gma19g02028 19 49230155 49233294 ECH
Gma19g02028 19 49230155 49233294 Gma03g01995 03 45592245 45595841 GST
Gma19g02028 19 49230155 49233294 Gma10g00156 10 1470137 1473466 PCT
Gma19g02028 19 49230155 49233294 Gma02g00150 02 1432457 1435994 PCT
Gma10g00156 10 1470137 1473466 Gma19g02028 19 49230155 49233294 PCT
Gma02g00150 02 1432457 1435994 Gma19g02028 19 49230155 49233294 PCT