Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Gma03g01995 ATGCAACTGTTCCTGCACTGGATTCAGAACTTTCTTGCCCCATTGCAGTTTCAACTTGTTGCACACATGAAGAGCCTAGTGGCAGTGCTTTTACTTGTAGCAATAAGCACTGCCGTGGAAAGCAATGGAGAAGACAATGGTGGACCATGTAAACAGAATGCATTCAAGGCTAGGCCTCACAGTGTGTCGATCTTGGAGTTTGGGGCGGTTGGAGATGGAATAACACTGAACACAGTTGCATTCGAAAATGCAATGTTTTATCTCAAGTCATTTGCTGACAAAGGTGGTGCTCAACTATATGTTCCATCTGGCAAATGGCTAACTGGGAGTTTTAACCTCACCAGTCACCTCACTTTGTTCCTTGAGAGAGGAGCTATCATCATTGCATCTCAGGATTATTCTCATTGGGACATAGTGGATTTCCTCCCTTCTTATGGTAGAGGAATTGGGAGATATCGCAGCTTGATCTATGGGCAGAATTTAAGCGATGTGGTAATAACAGGTGATAATGGAACTATAGATGGACAAGGCTCTATCTGGTGGGAGCTGTTCAGTTCTAATTCCTTAAATTATAGTCGACCAAATCTTATAGAATTTGTTGATTCGGTTGATATCATAATTTCCAATTTGACTTTTCTTGACTCTCCTGCTTGGGGCATCCATCCAGTACATTGCAGTAACGTTCAAATTCAAAACATAACTTCTCGTGCACCAGCTGAATTCCCTTACACAAGTGGTATAGTTCCAGATTCTTCTCGGTATGTATGCATTGAGAACAGTAACATTAGCACTGGTCATGATGCAGTGGTGCTGAAGAGTGGTTGGGATCAGTATGGCATTGCCTATGGAAAACCAACCTCAAGTGTTCACATCAGTAATGTTTACCTACAATCATCATCAGGTGCTGGCTTGGCATTTGGGAGTGAGATGTCTGGGGGGATATCTGATATTATTGCAGAGAAGCTTCATATACTCAACTCTCCTATTGGCATTGAACTGAAGACAACTAAGGGTAGAGGTGGTTATATGAGAGGGATCTTCATTTCTGATGCAGAATTGGAAAATATTAGCTTGGGAATAAGCATGACAGGATACTCCGGTTTCCATCCAGATGACAAGTATGACACAAGTGCACTTCCAATTGTTGGTGACATTACTTTCAAGAATGTGATTGGTGCAAATATTAGTGTTGCTGGGAATTTTTCAGGAATCGTTGAATCACCATTCTCAACAATCTGTCTTTCAAACGTGACTTTTTCTCTCAGCTCTGAGCCATCTCCTTCATGGTTCTGTTCTAATGTAATTGGTTTCTCTGAGGATGTGATTCCCGAGCCATGTCCTGATCTCCAGAGCTCACAGCTATACTTGACTAAATCTGATGTAGTGGGAGTGGCTAACAATTCCATCAATGGCTGTTCATTGTCCCACTCCACGCTGGAGTTGGGGAACCTGAAGCTGCCAAAATACATCACTTCAACTTTCTTACGTACCATCTAA 1497 0.4222 MQLFLHWIQNFLAPLQFQLVAHMKSLVAVLLLVAISTAVESNGEDNGGPCKQNAFKARPHSVSILEFGAVGDGITLNTVAFENAMFYLKSFADKGGAQLYVPSGKWLTGSFNLTSHLTLFLERGAIIIASQDYSHWDIVDFLPSYGRGIGRYRSLIYGQNLSDVVITGDNGTIDGQGSIWWELFSSNSLNYSRPNLIEFVDSVDIIISNLTFLDSPAWGIHPVHCSNVQIQNITSRAPAEFPYTSGIVPDSSRYVCIENSNISTGHDAVVLKSGWDQYGIAYGKPTSSVHISNVYLQSSSGAGLAFGSEMSGGISDIIAEKLHILNSPIGIELKTTKGRGGYMRGIFISDAELENISLGISMTGYSGFHPDDKYDTSALPIVGDITFKNVIGANISVAGNFSGIVESPFSTICLSNVTFSLSSEPSPSWFCSNVIGFSEDVIPEPCPDLQSSQLYLTKSDVVGVANNSINGCSLSHSTLELGNLKLPKYITSTFLRTI 498
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Gma03g01995 498 SUPERFAMILY Pectin lyase-like 49 449 IPR011050 -
Gma03g01995 498 Pfam Glycosyl hydrolases family 28 153 434 IPR000743 GO:0004650|GO:0005975
Gma03g01995 498 PANTHER POLYGALACTURONASE-RELATED 27 457 - -
Gma03g01995 498 Gene3D - 49 436 IPR012334 -
Gma03g01995 498 PANTHER PECTIN LYASE-RELATED 27 457 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Gma03g01995 Gma-Chr3 45592245 45595841 Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Gma03g01995 23 452 Glycoside Hydrolase AT3G16850 61.149 0.0 534
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Gma03g01995 - - gmx:100787190 900.968
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Gma03g01995 03 45592245 45595841 Gma03g01995 03 45592245 45595841 ECH
Gma19g02028 19 49230155 49233294 Gma03g01995 03 45592245 45595841 GST
Gma03g01995 03 45592245 45595841 Gma10g00156 10 1470137 1473466 PCT
Gma03g01995 03 45592245 45595841 Gma02g00150 02 1432457 1435994 PCT
Gma10g00156 10 1470137 1473466 Gma03g01995 03 45592245 45595841 PCT
Gma02g00150 02 1432457 1435994 Gma03g01995 03 45592245 45595841 PCT