Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Gma19g01777 ATGTCTCCTGCAATGGCACTAAATGAGCAAAAGGGCAAGGATGATATCCCAGAAAGTCAATATCAGAAAGGAGTGAAACACTTGTGTGAGAAAGGTCATCTTAATGCGGTGCCTAAGAAGTACATACTTCCTGTTTCCGAAAGACCCACCAAGAGTAGTGTGGAGGATTCAAATGTTGTGAAGCAAAATCTTCAATTACCCATCATTGATTTTTCCGAATTGCTTGGTCCAAATAGGCCCCAAGTCCTTCGATCCCTAGCCAATGCTTGTCAACAGTATGGATTTTTCCAGTTGGTAAATCATTGCATCTCGGAGGATGTTGTGAGGAGCATGATAGATGTGAGTGGGAGGTTCTTCGATCTCCCTTTGGAGGAGAGAGCTAAGTACATGACAACTGATATGCGAGCACCGGTTCGATGTGGGACCAGCTTCAGCCAAACCAAAGACACTGTGTTGTGTTGGAGGGATTTCTTGAAACTCCTGTGCCATCCCTTACCAGATTTACTCCTCCATTGGCCTGCTTCACCAGTGGACTTTCGGAAAGTGGTGGCCACCTACGCAGAAGAAACCAAACATTTGTTCCTGGTGGTAATGGAAGCCATCCTAGAGAGCTTAGGAATTGTGGAAGCCAACCAAGAAGAGGATGACAATATTCTCAAAGAGTTTGAAAATGGGAGCCAAATGATGGTGGCCAATTTCTACCCACCATGCCCTCAACCAGACCTTACCCTTGGGATGCCCCCTCACTCCGACTATGGCTTCCTCACACTTCTCCTACAAGACGAGGTAGAAGGCTTGCAAATCCAACACCAAGACAAATGGGTCACCGTTCAACCCATTCCCAATGCCTTCGTTGTCAATGTTGGTGATCACTTAGAGATATATAGCAACGGAAAATACAAGAGCGTATTGCATAGAGTTGTGGCGAATGAAATTAAGAGTAGGGTGTCGGTGGCTTCGCTGCACAGCCTTCCCTTCAACTGCACGGTGAGACCGTCGCCAAAACTCGTTGACGAAGCGAATCCGAAGCGTTACATGGACACTGATTTTGGGACCTTTCTTGCCTACGTATCCTCCACAGAGCCTAACAAAAAGGATTTCCTCGAGTCTAGAAAAGTGTTACACTGA 1128 0.4637 MSPAMALNEQKGKDDIPESQYQKGVKHLCEKGHLNAVPKKYILPVSERPTKSSVEDSNVVKQNLQLPIIDFSELLGPNRPQVLRSLANACQQYGFFQLVNHCISEDVVRSMIDVSGRFFDLPLEERAKYMTTDMRAPVRCGTSFSQTKDTVLCWRDFLKLLCHPLPDLLLHWPASPVDFRKVVATYAEETKHLFLVVMEAILESLGIVEANQEEDDNILKEFENGSQMMVANFYPPCPQPDLTLGMPPHSDYGFLTLLLQDEVEGLQIQHQDKWVTVQPIPNAFVVNVGDHLEIYSNGKYKSVLHRVVANEIKSRVSVASLHSLPFNCTVRPSPKLVDEANPKRYMDTDFGTFLAYVSSTEPNKKDFLESRKVLH 375
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Gma19g01777 375 Gene3D - 17 356 IPR027443 -
Gma19g01777 375 Pfam 2OG-Fe(II) oxygenase superfamily 227 322 IPR044861 -
Gma19g01777 375 PANTHER LEUCOANTHOCYANIDIN DIOXYGENASE-LIKE PROTEIN 14 373 - -
Gma19g01777 375 Pfam non-haem dioxygenase in morphine synthesis N-terminal 66 164 IPR026992 -
Gma19g01777 375 PRINTS Isopenicillin N synthase signature 86 103 - -
Gma19g01777 375 PRINTS Isopenicillin N synthase signature 249 270 - -
Gma19g01777 375 PRINTS Isopenicillin N synthase signature 284 310 - -
Gma19g01777 375 ProSiteProfiles Fe(2+) 2-oxoglutarate dioxygenase domain profile. 224 324 IPR005123 -
Gma19g01777 375 PANTHER 2-OXOGLUTARATE (2OG) AND FE(II)-DEPENDENT OXYGENASE SUPERFAMILY PROTEIN-RELATED 14 373 - -
Gma19g01777 375 SUPERFAMILY Clavaminate synthase-like 24 359 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Gma19g01777 Gma-Chr19 47041041 47044682 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Gma19g01777 22 348 Glycosyltransferase AT5G59530 35.777 1.95e-53 179
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Gma19g01777 - - gmx:100778488 757.673
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Gma19g01777 19 47041041 47044682 Gma03g01727 03 43374534 43377029 GST
Gma19g01777 19 47041041 47044682 Gma10g00576 10 6037762 6041235 PCT
Gma19g01777 19 47041041 47044682 Gma13g01269 13 27025605 27029510 PCT
Gma10g00576 10 6037762 6041235 Gma19g01777 19 47041041 47044682 PCT
Gma13g01269 13 27025605 27029510 Gma19g01777 19 47041041 47044682 PCT