Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Gma19g01298 ATGTCTGACGCGTTCTGCAGCGACTGCAAGAGACAGACCGAGGTGGTGTTCGACCACTCGGCGGGGGACACGGTGTGTTCCGAGTGCGGCCTCGTCTTGGAGTCTCACTCCATTGATGAAACCTCCGAGTGGCGAACCTTCGCGAATGAGTCCGGCGACAACGACCCTGTCCGTGTCGGTGGGCCCACCAACCCGCTACTAACCGACGGCGGCCTCTCCACCGTCATCGCCAAGCCCAGTGGCGGCTCCAGCGAGTTCCTATCGTCCTCTCTCGGCCGCTGGCAGAGCCGCGGCTCCAACCCCGACCGCGGCCTCATCGTCGCCTTCAAAACCATCGCCACCATGTCCGATAGGTCAGATCGGGCTAATGAGATATATAAACGAGTTGAAGATCAGAAGTCTAGTAGAGGAAGAAATCAGGATGCATTATTGGCTGCTTGCCTGTACATTGCTTGTCGACAAGAAGACAAGCCACGCACTGTAAAGGAAATTTGCTCTGTTGCCAATGGAGCCACAAAGAAGGAAATTGGCCGAGCGAAAGAATACATAGTAAAACAACTGGGATTGGAACAGGGCCAATCTGTAGAGATGGGAACAATACATGCTGGGGACTTTATGAGACGTTTTTGTTCTAATCTCGGAATGACTAATCAAGCTGTTAAAGCTGCTCAGGAAGCTGTCCAGAAATCAGAAGAATTTGATATAAGGAGGAGTCCCATATCAATTGCTGCAGCAGTTATATACATCATAACTCAGCTTTCTGATGATAAAAAACCTCTCAAAGATATATCAGTTGCCACAGGAGTTGCAGAAGGAACCATTAGGAACTCATACAAGGATCTTTATCCCCATGTTTCAAAAATAATACCAAGCTGGTATGCAAAAGAAGATGATTTGAAGAACCTGTGCAGTCCTTAA 918 0.4935 MSDAFCSDCKRQTEVVFDHSAGDTVCSECGLVLESHSIDETSEWRTFANESGDNDPVRVGGPTNPLLTDGGLSTVIAKPSGGSSEFLSSSLGRWQSRGSNPDRGLIVAFKTIATMSDRSDRANEIYKRVEDQKSSRGRNQDALLAACLYIACRQEDKPRTVKEICSVANGATKKEIGRAKEYIVKQLGLEQGQSVEMGTIHAGDFMRRFCSNLGMTNQAVKAAQEAVQKSEEFDIRRSPISIAAAVIYIITQLSDDKKPLKDISVATGVAEGTIRNSYKDLYPHVSKIIPSWYAKEDDLKNLCSP 305
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Gma19g01298 305 CDD CYCLIN 200 282 IPR013763 -
Gma19g01298 305 Gene3D - 201 304 - -
Gma19g01298 305 SUPERFAMILY Cyclin-like 119 189 IPR036915 -
Gma19g01298 305 SUPERFAMILY Cyclin-like 200 302 IPR036915 -
Gma19g01298 305 CDD CYCLIN 122 178 IPR013763 -
Gma19g01298 305 PANTHER TRANSCRIPTION INITIATION FACTOR IIB-RELATED 3 305 IPR000812 GO:0006352|GO:0070897
Gma19g01298 305 ProSitePatterns Transcription factor TFIIB repeat signature. 137 152 IPR023486 -
Gma19g01298 305 PRINTS Transcription initiation factor IIB signature 41 54 IPR000812 GO:0006352|GO:0070897
Gma19g01298 305 PRINTS Transcription initiation factor IIB signature 19 39 IPR000812 GO:0006352|GO:0070897
Gma19g01298 305 PRINTS Transcription initiation factor IIB signature 172 187 IPR000812 GO:0006352|GO:0070897
Gma19g01298 305 PRINTS Transcription initiation factor IIB signature 205 223 IPR000812 GO:0006352|GO:0070897
Gma19g01298 305 PRINTS Transcription initiation factor IIB signature 269 283 IPR000812 GO:0006352|GO:0070897
Gma19g01298 305 PRINTS Transcription initiation factor IIB signature 145 164 IPR000812 GO:0006352|GO:0070897
Gma19g01298 305 PRINTS Transcription initiation factor IIB signature 237 253 IPR000812 GO:0006352|GO:0070897
Gma19g01298 305 PRINTS Transcription initiation factor IIB signature 55 76 IPR000812 GO:0006352|GO:0070897
Gma19g01298 305 SMART cyclin_7 204 283 IPR013763 -
Gma19g01298 305 SMART cyclin_7 110 185 IPR013763 -
Gma19g01298 305 Gene3D - 5 186 - -
Gma19g01298 305 PANTHER TRANSCRIPTION INITIATION FACTOR IIB-RELATED 3 305 - -
Gma19g01298 305 SUPERFAMILY Zinc beta-ribbon 4 50 - -
Gma19g01298 305 Pfam TFIIB zinc-binding 6 47 IPR013137 -
Gma19g01298 305 Pfam Transcription factor TFIIB repeat 197 283 IPR013150 GO:0017025
Gma19g01298 305 Pfam Transcription factor TFIIB repeat 119 178 IPR013150 GO:0017025
Gma19g01298 305 ProSiteProfiles Zinc finger TFIIB-type profile. 2 34 IPR013137 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Gma19g01298 Gma-Chr19 42191638 42195291 Dispersed/Wgd
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Gma19g01298 K03124 - jre:109014312 576.63
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Gma19g01298 19 42191638 42195291 Gma19g01298 19 42191638 42195291 ECH
Gma19g01298 19 42191638 42195291 Gma03g01250 03 38434593 38437582 GST
Gma19g01298 19 42191638 42195291 Gma10g01028 10 27241244 27245605 PCT
Gma19g01298 19 42191638 42195291 Gma02g01749 02 38683236 38687534 PCT
Gma10g01028 10 27241244 27245605 Gma19g01298 19 42191638 42195291 PCT
Gma02g01749 02 38683236 38687534 Gma19g01298 19 42191638 42195291 PCT