Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Gma03g01250 ATGTCTGAAACCTTCTGCAGCGACTGCAAGAGGCAGACGGAGGTGGTGTTCGACCACTCTGCGGGGGACACGGTGTGCTCCGAGTGCGGCCTCGTTTTGGAGTCTCACTCCATTGATGAAACCTCCGAGTGGCGAACCTTTGCCAATGAGTCTGGCGACAACGACCCTGTCCGTGTCGGTGGGCCCACCAACCCGCTACTGACCGACGGCGGCCTCTCCACCGTCATCGCCAAGCCCAACGGTGGCTCCGGCGAGTTCCTGTCGTCCTCCGTCGGCCGCTGGCAGAACCGCGGCCTCATCGTCGCCTTCAAAACCATCGCCACCATGTCGGATAGGTCAGTCAGACACACGCTCCACAGTTATTGGAGTTATAAGGATCGGGCTAATGAGATATATAAACGGGTTGAAGATCAGAAGTCTAGTAGAGGAAGAAATCAGGATGCATTATTGGCTGCTTGTCTCTACATTTCTTGTCGACAAGAAGACAAACCACGCACTGTAAAGGAAATTTGCTCTGTTGCCAATGGAGCCACAAAGAAGGAAATTGGCCGAGCGAAAGAATACATAGTGAAACAACTGGGTTTGGAGCAGGGCCAATCTGTAGAGATAGGAACGATACATGCTGGGGACTTTATGAGACGTTTTTGTTCTAATCTCGGTATGACTAATCAAGCTGTTAAAGCGGCTCAGGAAGCTGTTCAGAAATCAGAAGAATTTGATATAAGGAGGAGTCCCATATCAATTGCTGCAGCAGTTATATACATCATAACTCAGCTTTCTGATGATAAAAAACCTCCCAAAGATATATCAGTTGCCACAGGAGTTGCAGAAGGAACCATTAGAAACTCGTACAAGGATCTTTATCCCCATGTTTCAAAAATAATACCAAGCTGGTATGCAAAGGAAGAGGATTTGAAGAACCTATCCAGCCCTTAA 936 0.4872 MSETFCSDCKRQTEVVFDHSAGDTVCSECGLVLESHSIDETSEWRTFANESGDNDPVRVGGPTNPLLTDGGLSTVIAKPNGGSGEFLSSSVGRWQNRGLIVAFKTIATMSDRSVRHTLHSYWSYKDRANEIYKRVEDQKSSRGRNQDALLAACLYISCRQEDKPRTVKEICSVANGATKKEIGRAKEYIVKQLGLEQGQSVEIGTIHAGDFMRRFCSNLGMTNQAVKAAQEAVQKSEEFDIRRSPISIAAAVIYIITQLSDDKKPPKDISVATGVAEGTIRNSYKDLYPHVSKIIPSWYAKEEDLKNLSSP 311
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Gma03g01250 311 Pfam TFIIB zinc-binding 5 47 IPR013137 -
Gma03g01250 311 Pfam Transcription factor TFIIB repeat 124 184 IPR013150 GO:0017025
Gma03g01250 311 Pfam Transcription factor TFIIB repeat 206 289 IPR013150 GO:0017025
Gma03g01250 311 SUPERFAMILY Cyclin-like 206 308 IPR036915 -
Gma03g01250 311 PANTHER TRANSCRIPTION INITIATION FACTOR IIB-RELATED 3 311 - -
Gma03g01250 311 SUPERFAMILY Cyclin-like 124 195 IPR036915 -
Gma03g01250 311 PANTHER TRANSCRIPTION INITIATION FACTOR IIB-RELATED 3 311 IPR000812 GO:0006352|GO:0070897
Gma03g01250 311 SUPERFAMILY Zinc beta-ribbon 3 50 - -
Gma03g01250 311 CDD CYCLIN 206 288 IPR013763 -
Gma03g01250 311 Gene3D - 5 192 - -
Gma03g01250 311 CDD CYCLIN 128 184 IPR013763 -
Gma03g01250 311 SMART cyclin_7 210 289 IPR013763 -
Gma03g01250 311 SMART cyclin_7 107 191 IPR013763 -
Gma03g01250 311 ProSiteProfiles Zinc finger TFIIB-type profile. 2 34 IPR013137 -
Gma03g01250 311 Gene3D - 207 310 - -
Gma03g01250 311 ProSitePatterns Transcription factor TFIIB repeat signature. 143 158 IPR023486 -
Gma03g01250 311 PRINTS Transcription initiation factor IIB signature 243 259 IPR000812 GO:0006352|GO:0070897
Gma03g01250 311 PRINTS Transcription initiation factor IIB signature 211 229 IPR000812 GO:0006352|GO:0070897
Gma03g01250 311 PRINTS Transcription initiation factor IIB signature 178 193 IPR000812 GO:0006352|GO:0070897
Gma03g01250 311 PRINTS Transcription initiation factor IIB signature 55 76 IPR000812 GO:0006352|GO:0070897
Gma03g01250 311 PRINTS Transcription initiation factor IIB signature 275 289 IPR000812 GO:0006352|GO:0070897
Gma03g01250 311 PRINTS Transcription initiation factor IIB signature 19 39 IPR000812 GO:0006352|GO:0070897
Gma03g01250 311 PRINTS Transcription initiation factor IIB signature 41 54 IPR000812 GO:0006352|GO:0070897
Gma03g01250 311 PRINTS Transcription initiation factor IIB signature 151 170 IPR000812 GO:0006352|GO:0070897
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Gma03g01250 Gma-Chr3 38434593 38437582 Wgd
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Gma03g01250 K03124 - gmx:100800061 583.563
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Gma03g01250 03 38434593 38437582 Gma03g01250 03 38434593 38437582 ECH
Gma19g01298 19 42191638 42195291 Gma03g01250 03 38434593 38437582 GST
Gma03g01250 03 38434593 38437582 Gma10g01028 10 27241244 27245605 PCT
Gma03g01250 03 38434593 38437582 Gma02g01749 02 38683236 38687534 PCT
Gma10g01028 10 27241244 27245605 Gma03g01250 03 38434593 38437582 PCT
Gma02g01749 02 38683236 38687534 Gma03g01250 03 38434593 38437582 PCT