Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Gma10g01028 ATGTCAGACGCGTTCTGCAGCGACTGCAAGAGGCAGACGGAGGTGGTGTTCGACCACTCCGCCGGCGACACGGTGTGCTCGGAGTGCGGCCTCGTCCTCGAATCCCACTCCATCGACGAGACCTCCGAGTGGCGCACCTTCGCCAACGAGTCCGGCGACAACGACCCCAACCGTGTCGGTGGGCCCTCCAATCCCCTCCTCACCGACGGAGGCCTCTCGACCGTCATCGCCAAGCCCAACGGCGGCGGCGGTGGCGAGTTCCTCTCCTCCTCCCTCGGCCGCTGGCAGAACCGCGGCTCCAACCCCGATCGCGCCCTCATCCAAGCCTTCAAGACCATCGCCACCATGTCCGATAGGTTGGGACTAGTTGCGACCATCAAGGATCGGGCAAATGAGATATATAAGAGGGTTGAAGATCAAAAGTCTAGTAGAGGAAGAAATCAAGATGCTTTATTGGCTGCTTGTCTCTACATCGCTTGCCGACAAGAAGACAAACCTCGTACTGTAAAGGAAATTTGCTCTGTTGCCAATGGGGCCACAAAGAAGGAAATTGGCCGAGCAAAAGAATACATAGTAAAACAACTGGGTTTGGAGAATGGTAATGCTGTGGAGATGGGTACAATACATGCAGGGGACTTTATGAGGCGATTCTGTTCTAATCTTTGTATGAATAATCAAGCTGTTAAAGCTGCTCAGGAAGCTGTGCAGAAATCAGAAGAATTTGATATAAGGAGGAGTCCCATATCAATTGCTGCAGCAGTTATATACATCATAACTCAGCTTTCTGATGATAAGAAGCCTCTCAAAGATATATCACTTGCCACAGGCGTTGCAGAAGGAACAATTAGGAACTCCTACAAGGATCTTTATCCTCATGTTTCCAAAATAATACCAAATTGGTATGCTAAGGAGGAGGATTTAAAGAACCTTTGCAGCCCTTGA 942 0.5053 MSDAFCSDCKRQTEVVFDHSAGDTVCSECGLVLESHSIDETSEWRTFANESGDNDPNRVGGPSNPLLTDGGLSTVIAKPNGGGGGEFLSSSLGRWQNRGSNPDRALIQAFKTIATMSDRLGLVATIKDRANEIYKRVEDQKSSRGRNQDALLAACLYIACRQEDKPRTVKEICSVANGATKKEIGRAKEYIVKQLGLENGNAVEMGTIHAGDFMRRFCSNLCMNNQAVKAAQEAVQKSEEFDIRRSPISIAAAVIYIITQLSDDKKPLKDISLATGVAEGTIRNSYKDLYPHVSKIIPNWYAKEEDLKNLCSP 313
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Gma10g01028 313 CDD CYCLIN 113 186 IPR013763 -
Gma10g01028 313 PANTHER TRANSCRIPTION INITIATION FACTOR IIB-RELATED 3 313 IPR000812 GO:0006352|GO:0070897
Gma10g01028 313 CDD CYCLIN 208 290 IPR013763 -
Gma10g01028 313 Gene3D - 209 312 - -
Gma10g01028 313 PRINTS Transcription initiation factor IIB signature 19 39 IPR000812 GO:0006352|GO:0070897
Gma10g01028 313 PRINTS Transcription initiation factor IIB signature 41 54 IPR000812 GO:0006352|GO:0070897
Gma10g01028 313 PRINTS Transcription initiation factor IIB signature 55 76 IPR000812 GO:0006352|GO:0070897
Gma10g01028 313 PRINTS Transcription initiation factor IIB signature 153 172 IPR000812 GO:0006352|GO:0070897
Gma10g01028 313 PRINTS Transcription initiation factor IIB signature 180 195 IPR000812 GO:0006352|GO:0070897
Gma10g01028 313 PRINTS Transcription initiation factor IIB signature 213 231 IPR000812 GO:0006352|GO:0070897
Gma10g01028 313 PRINTS Transcription initiation factor IIB signature 245 261 IPR000812 GO:0006352|GO:0070897
Gma10g01028 313 PRINTS Transcription initiation factor IIB signature 277 291 IPR000812 GO:0006352|GO:0070897
Gma10g01028 313 SMART cyclin_7 111 193 IPR013763 -
Gma10g01028 313 SMART cyclin_7 212 291 IPR013763 -
Gma10g01028 313 PANTHER TRANSCRIPTION INITIATION FACTOR IIB-RELATED 3 313 - -
Gma10g01028 313 SUPERFAMILY Zinc beta-ribbon 4 50 - -
Gma10g01028 313 SUPERFAMILY Cyclin-like 208 309 IPR036915 -
Gma10g01028 313 ProSitePatterns Transcription factor TFIIB repeat signature. 145 160 IPR023486 -
Gma10g01028 313 SUPERFAMILY Cyclin-like 106 197 IPR036915 -
Gma10g01028 313 Pfam TFIIB zinc-binding 6 47 IPR013137 -
Gma10g01028 313 Gene3D - 5 194 - -
Gma10g01028 313 Pfam Transcription factor TFIIB repeat 103 186 IPR013150 GO:0017025
Gma10g01028 313 Pfam Transcription factor TFIIB repeat 205 291 IPR013150 GO:0017025
Gma10g01028 313 ProSiteProfiles Zinc finger TFIIB-type profile. 2 34 IPR013137 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Gma10g01028 Gma-Chr10 27241244 27245605 Dispersed/Wgd
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Gma10g01028 K03124 - gmx:548070 613.994
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Gma10g01028 10 27241244 27245605 Gma10g01028 10 27241244 27245605 ECH
Gma10g01028 10 27241244 27245605 Gma02g01749 02 38683236 38687534 GST
Gma19g01298 19 42191638 42195291 Gma10g01028 10 27241244 27245605 PCT
Gma03g01250 03 38434593 38437582 Gma10g01028 10 27241244 27245605 PCT
Gma10g01028 10 27241244 27245605 Gma19g01298 19 42191638 42195291 PCT
Gma10g01028 10 27241244 27245605 Gma03g01250 03 38434593 38437582 PCT