Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Gma18g00371 ATGGACGAAGAAGAGGTGCGCAAGATCTTCAGCAAGTTCGACAAGAACGGCGACGGCAAGATCTCGTGCGCGGAGCTGAAGGAGATGATGGCGGCGCTGGGATCCAAAACGACGTCGGACGAGGTGAAGCGCATGATGGCGGAGCTGGACCGGAACGGCGACGGCTACATTGACTTGAAGGAGTTCGGCGAGTTCCACTGCGGCGGCGGTGGCGACGGGAGGGAGCTCCGGGAGGCGTTCGAGCTGTACGATCTGGACAAGAACGGGCTGATCTCGGCGAAGGAGCTGCACTCCGTGATGCGGAGGTTGGGGGAGAAGTGCTCCCTCAGCGACTGCCGGAGGATGATCGGAAACGTCGATGCCGACGGCGACGGCAACGTCAATTTCGAAGAGTTCAAGAAGATGATGAGTCGCTCGTAG 420 0.6024 MDEEEVRKIFSKFDKNGDGKISCAELKEMMAALGSKTTSDEVKRMMAELDRNGDGYIDLKEFGEFHCGGGGDGRELREAFELYDLDKNGLISAKELHSVMRRLGEKCSLSDCRRMIGNVDADGDGNVNFEEFKKMMSRS 139
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Gma18g00371 139 ProSitePatterns EF-hand calcium-binding domain. 14 26 IPR018247 -
Gma18g00371 139 PANTHER EF-HAND CALCIUM-BINDING DOMAIN CONTAINING PROTEIN 1 139 - -
Gma18g00371 139 SMART efh_1 41 69 IPR002048 GO:0005509
Gma18g00371 139 SMART efh_1 75 103 IPR002048 GO:0005509
Gma18g00371 139 SMART efh_1 5 33 IPR002048 GO:0005509
Gma18g00371 139 SMART efh_1 111 139 IPR002048 GO:0005509
Gma18g00371 139 Pfam EF-hand domain pair 75 137 IPR002048 GO:0005509
Gma18g00371 139 Pfam EF-hand domain pair 4 63 IPR002048 GO:0005509
Gma18g00371 139 Gene3D - 72 139 - -
Gma18g00371 139 PANTHER EF HAND CALCIUM-BINDING FAMILY PROTEIN 1 139 - -
Gma18g00371 139 CDD EFh 75 137 IPR002048 GO:0005509
Gma18g00371 139 ProSiteProfiles EF-hand calcium-binding domain profile. 1 36 IPR002048 GO:0005509
Gma18g00371 139 SUPERFAMILY EF-hand 3 138 IPR011992 -
Gma18g00371 139 ProSitePatterns EF-hand calcium-binding domain. 120 132 IPR018247 -
Gma18g00371 139 ProSitePatterns EF-hand calcium-binding domain. 84 96 IPR018247 -
Gma18g00371 139 ProSiteProfiles EF-hand calcium-binding domain profile. 107 139 IPR002048 GO:0005509
Gma18g00371 139 ProSiteProfiles EF-hand calcium-binding domain profile. 37 65 IPR002048 GO:0005509
Gma18g00371 139 ProSiteProfiles EF-hand calcium-binding domain profile. 71 106 IPR002048 GO:0005509
Gma18g00371 139 Gene3D - 1 67 - -
Gma18g00371 139 CDD EFh 5 62 IPR002048 GO:0005509
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Gma18g00371 Gma-Chr18 3253928 3254959 Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Gma18g00371 2 137 EF-hand Containing Proteins AT1G18210 56.618 1.73e-52 162
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Gma18g00371 K13448 - gmx:100791597 274.248
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Gma18g00371 18 3253928 3254959 Gma11g02199 11 37220190 37222752 GST
Gma18g00371 18 3253928 3254959 Gma14g02102 14 52120488 52125354 PCT
Gma18g00371 18 3253928 3254959 Gma02g02323 02 49328877 49329782 PCT
Gma14g02102 14 52120488 52125354 Gma18g00371 18 3253928 3254959 PCT
Gma02g02323 02 49328877 49329782 Gma18g00371 18 3253928 3254959 PCT