Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Gma18g00242 ATGGCGGCTGCCAACGCTCCGATCGCCATGAGAGAAGCTCTCACCTTGCCAAGCATTGGCATAAATCCGCAGTTCATCACTTTCACGCATGTGACGATGGAGTCCGATAAGTATATATGCGTTCGAGAAACGGCTCCGCAGAATAGTGTGGTTATCATTGATATGAACATGCCGAATCAGCCTTTGAGGAGGCCTATTACGGCAGATTCCGCTCTTATGAATCCAAATTCCAGAATCCTTGCTTTGAAAGCTCAACTCCAAGGAACAACTCAAGATCACCTACAAATTTTTAACATTGAAATGAAAGCAAAGATGAAATCTTATCAGATGCCCGAGCAGGTGGTCttttggaagtggattacccccaagttgttgggtcttgtaacacagacctctgtataccattggtcaattgaagGTGACTCTGAACCTGTAAAGATGTTTGAGAGAACAGCAAATTTGGCAAACAATCAAATAATTAATTATAGATGTGATCCTTCTGAGAAATGGTTGGTCTTGATTGGTATTGCTCCAGGTTCCCCTGAGAGGCCACAATTGGTTAAAGGAAACATGCAACTCTTCTCTGTGGATCAACAGCGGAGCCAGGCTCTTGAAGCACATGCGGCATCATTTGCTCAATTCAAAGTTCCTGGGAATGAAAATCCTTCTACTTTGATTTCTTTTGCCACTAAAACACTTAATGCTGGCCAAATTATATCCAAGTTACATGTTATTGAGCTGGGTGCACAGCCAGGGAAGCCATCATTTACAAAGAAACAAGCAGATCTTTTCTTTCCCCCAGATTTTGCTGATGATTTTCCAGTTGCCATGCAGATATCCCACAAATACAGTTTGATTTATGTGATAACGAAACTTGGTCTCCTATTTGTCTACGATTTGGAGACAGCTACAGCTGTATATAGGAACAGAATTAGTCCAGATCCTATATTTTTGACATCAGAAGCTACATCTGTTGGAGGCTTTTATGCCATTAATAGGAGAGGCCAGGTGTTGTTGGCTACTGTTAATGAGCAAACGATCGTGAATTTTGTCAGTGGTCAGTTAAACAATTTGGAGCTAGCAGTTAATCTTGCCAAGCGAGGAAATCTTCCTGGTGCTGAGAAACTGGTGGTAGAACGTTTCCATGAACTGTTTGCCCAAACAAAGTATAAAGAAGCAGCTGAACTTGCTGCTGAGTCTCCGCAAGGAATCCTTCGCACACCTGATACAGTTGCCAAATTTCAGAGTGTTCCTGTGCAAGCTGGGCAAACTCCTCCACTATTGCAGTATTTTGGAACACTTCTAACAAGAGGAAAGCTGAATGCCTTTGAGTCATTGGAATTGTCAAGGCTGGTTGTGAACCAGAACAAGAAAAATCTTTTGGAGAATTGGTTGGCGGAGGATAAGCTTGAATGCAGTGAGGAGCTAGGAGATCTTGTAAAGactgtggacaatgatcttgctttaaaaatatacatcaaagccagagctactccaaaagttgttgctgcttttgctgagagaagggagtttgacaagattctaatatactctaagcagGTTGGGTACACGCCTGACTATCTCTTCCTTTTGCAAACAATTCTCCGGACAGATCCTCAGGGTGCTGTTAATTTTGCATTAATGATGTCGCAAATGGAGGGAGGTTGCCCAGTTGATTACAACACCATAACTGATCTGTTTCTTCAGAGAAATCTGATCCGTGAGGCAACAGCCTTTCTGCTAGATGTTCTGAAACCAAATCTACCAGAACATGGGTACCTTCAAACAAAGGTGTTGGAGATAAATCTGGTTACTTTCCCAAATGTTGCTGATGCAATTTTGGCTAATGGAATGTTCAGCCATTATGACCGTCCTCGTATTGCTCAACTTTGTGAAAAAGCTGGTCTTTATGTGCGAGCTTTGCAAcattacacagagttgccagatataaaacgtgtgattgtaaatacacatgcaattgagccacagtcactcgttgaattttttggtactctgtcaagagaatgggcattagagtgtatgaaagacctattgctggtcaatcttagaggcaacctacagattattgtgcaggttgctaaagaatattgtgaacaattgggcgttgatgcttgcataaagctttttgagcagttcaggtcatatgaagggctgtattttttcctgggatcatatttgagctccagTGAGGATCCTGACATTCACTTCAAGTACATTGAGGCAGCAGCAAAGACTGGACAAATCAAAGAGGTTGAGCGTGTGACTAGAGAATCAAGTTTTTATGATCCTGAGAAAACAAAGAACTTTCTAATGGAAGCTAAGCTTCCAGATGCACGACCTCTGATTAATGTTTGTGACCGATTTGGATTTGTTCCGGATCTAACACACTATCTATACACAAACAACATGCTTCGTTACATTGAAGGTTATGTTCAGAAGGTGAACCCAGGGAATGCTCCTTTAGTCGTTGGGCAGCTTTTAGATGATGAATGTCCAGAAGATTTTATCAAAGGCTTGATTCTCTCTGTTCGTTCCTTACTGCCAGTGGAGCCCCTTGTGGAGGAGTGTGAGAAGAGGAATCGGCTTCGTTTGCTTACACAGTTTTTGGAACATCTTGTAAGTGAGGGAAGCCAGGATGTACATGTTCACAATGCACTGGGTAAAATCATCATTGATAGCAACAACAATCCGGAACATTTTCTCACTACCAACCCATACTATGATTCTCGGgttgtgggcaaatattgtgagaaacgtgatcccaccttggcagttgtagcttataggcggggacaatgtgatgacgagcttatcaatgtgacaaacaaaaattctttgttcaaactgcaagcaagatatgttgttgagaggatggatggtgatctttgggagaaagttcttaaccctgataatgcctacagaaggcaacttattgatcaggttgtatctacagctcttcctgaaagcaagaGCCCTGAACAAGTATCTGCAGCTGTTAAGGCTTTCATGACTGCTGATCTACCTCACGAATTGATTGAGCTTCTTGAGAAGATTGTGCTTCAGAATTCTGCATTCAGTGGGAACTTTAATCTTCAGAATCTGCTTATTTTAACAGCAATAAAGGCTGATCCGTCCAGAGTTATGGATTATATTAATAGACTGGATAATTTTGATGGGCCAGCAGTTGGAGAAATGGCTGTTGAGGCTCAATTATATGAGGAAGCATTTGCAATTTTCAAGAAGTTCAACTTAAATGTCCAAGCAGTCAATGTCTTGCTAGATCATATTCATAGCATTGATAGAGCTGTGGAGTTTGCTTTCCGAGTTGAAGAAGATGCTGTTTGGAGTCAGGTAGCCAAGGCTCAACTAAGGGAAGGGCTAGTAAGTGATGCCATTGAGTCCTTTATACGAGCAGACGATGCCACACAGTTTTTGGATGTTATCCGTGCTGCTGAAGATGGAAATGCTTACCATGACTTGGTGAGATACTTGTTGATGGTAAGGCATAAGACAAAAGAACCCAAGGTGGACAGTGAGCTCATTTACGCGTATGCAAAGATTGATCGGCTCAGTGACATTGAGGAGTTCATTCTTATGCCAAATGTAGCCAATCTTCAAAATGTTGGTGACCGATTATATGATGAAGAACTATATGAGGCTGCTAAAATCATATTTGCTTTTATATCTAACTGGGCCAAGTTAGCAGTTACACTTGTGAAGTTGAAACAATTCCAAGGTGCAGTTGATGCAGCAAGGAAAGCTAACAGTGCAAAAACATGGAAGGAAGTTTGCTTTGCATGTGTTGACGCGGAGGAGTTTCGTTTGGCCCAGATATGTGGGCTTAATATTATTATTCAGGTGGATGACTTGGAAGAGGTCAGTGAATATTACCAAAATAGAGGTTGCTTCAATGAGCTAATATCGCTTATGGAGAGTGGTTTAGGATTAGAACGGGCACATATGGGTATCTTTACAGAGTTAGGAGTTCTGTATGCTAGATATCGTCATGAGAAGCTTATGGAGCATATCAAACTATTTGCGACCCGACTCAATATTCCAAAACTCATAAGAGCTTGTGATGAACAACAACATTGGAAGGAGCTGACATATTTGTACATCCAATATGATGAGTTCGATAATGCTGCAACAACCATCATGAACCATTCACCTGAAGCATGGGATCACATGCAATTCAAAGATGTTGTTGTCAAAGTTGCTAATGTAGAGTTGTATTACAAGGCTGTTCATTTCTATTTACAAGAGCATCCGGATCTTATCAATGATGTTTTGAATGTCCTTGCACTTCGTGTTGATCATGCACGTGTTGTTGACATCATGCGAAAGGCTGGTCATCTCCGTCTTGTCAAGCCATACATGGTTGCAGTTCAGAGTAACAATGTGTCTGCTGTTAATGAAGCCCTTAATGAAATATATGTTGAGGAGGAAGACTATGATAGATTGCGCGAGTCGATTGATTTGCACGATAACTTCGACCAAATAGGCCTAGCACAGAAGATTGAAAAGCATGAGCTTCTTGAGATGAGACGTGTTGCTGCTTATATTTACAAGAAGGCAGGTAGATGGAAGCAGTCCATTGCCTTGTCAAAGAAGGATAACCTTTACAAAGATGCCATGGAGACAGCCTCGCAATCTGGTGACCGTGAACTTGCTGAGGAGTTGCTTGTTTATTTCATTGATCAGGGAAAGAAAGAATGCTTTGCCTCGTGTCTATTTGTTTGCTATGATTTGATCCGGGCAGACATTGCTCTTGAATTGGCCTGGATGAACAATATGATTGACTTTGCCTTCCCATATCTCCTGCAGTTTATCCGTGAGTACACCGGCAAAGTTGATGAACTGGTGAAGGATAAAATTGAAGCGCAGAACCAAGTGAAGGCTAAAGAACAAGAAGAGAAGGAAGTAATTGCTCAACAGAATATGTATGCTCAGTTGTTGCCTCTTGCTTTGCCCGCACCACCAATGCCTGGAATGGGAGGAGGCTTTGCGCCTCCCCCTCCAATGGGTGGATTGGGGATGCCTCCAATGCCTCCTTTTGGAATGCCACCCATGGGCAGCTACTGA 5103 0.3635 MAAANAPIAMREALTLPSIGINPQFITFTHVTMESDKYICVRETAPQNSVVIIDMNMPNQPLRRPITADSALMNPNSRILALKAQLQGTTQDHLQIFNIEMKAKMKSYQMPEQVVFWKWITPKLLGLVTQTSVYHWSIEGDSEPVKMFERTANLANNQIINYRCDPSEKWLVLIGIAPGSPERPQLVKGNMQLFSVDQQRSQALEAHAASFAQFKVPGNENPSTLISFATKTLNAGQIISKLHVIELGAQPGKPSFTKKQADLFFPPDFADDFPVAMQISHKYSLIYVITKLGLLFVYDLETATAVYRNRISPDPIFLTSEATSVGGFYAINRRGQVLLATVNEQTIVNFVSGQLNNLELAVNLAKRGNLPGAEKLVVERFHELFAQTKYKEAAELAAESPQGILRTPDTVAKFQSVPVQAGQTPPLLQYFGTLLTRGKLNAFESLELSRLVVNQNKKNLLENWLAEDKLECSEELGDLVKTVDNDLALKIYIKARATPKVVAAFAERREFDKILIYSKQVGYTPDYLFLLQTILRTDPQGAVNFALMMSQMEGGCPVDYNTITDLFLQRNLIREATAFLLDVLKPNLPEHGYLQTKVLEINLVTFPNVADAILANGMFSHYDRPRIAQLCEKAGLYVRALQHYTELPDIKRVIVNTHAIEPQSLVEFFGTLSREWALECMKDLLLVNLRGNLQIIVQVAKEYCEQLGVDACIKLFEQFRSYEGLYFFLGSYLSSSEDPDIHFKYIEAAAKTGQIKEVERVTRESSFYDPEKTKNFLMEAKLPDARPLINVCDRFGFVPDLTHYLYTNNMLRYIEGYVQKVNPGNAPLVVGQLLDDECPEDFIKGLILSVRSLLPVEPLVEECEKRNRLRLLTQFLEHLVSEGSQDVHVHNALGKIIIDSNNNPEHFLTTNPYYDSRVVGKYCEKRDPTLAVVAYRRGQCDDELINVTNKNSLFKLQARYVVERMDGDLWEKVLNPDNAYRRQLIDQVVSTALPESKSPEQVSAAVKAFMTADLPHELIELLEKIVLQNSAFSGNFNLQNLLILTAIKADPSRVMDYINRLDNFDGPAVGEMAVEAQLYEEAFAIFKKFNLNVQAVNVLLDHIHSIDRAVEFAFRVEEDAVWSQVAKAQLREGLVSDAIESFIRADDATQFLDVIRAAEDGNAYHDLVRYLLMVRHKTKEPKVDSELIYAYAKIDRLSDIEEFILMPNVANLQNVGDRLYDEELYEAAKIIFAFISNWAKLAVTLVKLKQFQGAVDAARKANSAKTWKEVCFACVDAEEFRLAQICGLNIIIQVDDLEEVSEYYQNRGCFNELISLMESGLGLERAHMGIFTELGVLYARYRHEKLMEHIKLFATRLNIPKLIRACDEQQHWKELTYLYIQYDEFDNAATTIMNHSPEAWDHMQFKDVVVKVANVELYYKAVHFYLQEHPDLINDVLNVLALRVDHARVVDIMRKAGHLRLVKPYMVAVQSNNVSAVNEALNEIYVEEEDYDRLRESIDLHDNFDQIGLAQKIEKHELLEMRRVAAYIYKKAGRWKQSIALSKKDNLYKDAMETASQSGDRELAEELLVYFIDQGKKECFASCLFVCYDLIRADIALELAWMNNMIDFAFPYLLQFIREYTGKVDELVKDKIEAQNQVKAKEQEEKEVIAQQNMYAQLLPLALPAPPMPGMGGGFAPPPPMGGLGMPPMPPFGMPPMGSY 1700
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Gma18g00242 1700 Coils Coil 1477 1497 - -
Gma18g00242 1700 PANTHER CLATHRIN HEAVY CHAIN 1 1698 - -
Gma18g00242 1700 SMART CLH_2 993 1138 IPR000547 GO:0006886|GO:0016192
Gma18g00242 1700 SMART CLH_2 1437 1596 IPR000547 GO:0006886|GO:0016192
Gma18g00242 1700 SMART CLH_2 700 842 IPR000547 GO:0006886|GO:0016192
Gma18g00242 1700 SMART CLH_2 1288 1434 IPR000547 GO:0006886|GO:0016192
Gma18g00242 1700 SMART CLH_2 847 986 IPR000547 GO:0006886|GO:0016192
Gma18g00242 1700 SMART CLH_2 1142 1283 IPR000547 GO:0006886|GO:0016192
Gma18g00242 1700 SMART CLH_2 551 693 IPR000547 GO:0006886|GO:0016192
Gma18g00242 1700 Pfam Clathrin-H-link 369 434 - -
Gma18g00242 1700 ProSiteProfiles Clathrin heavy-chain (CHCR) repeat profile. 551 697 IPR000547 GO:0006886|GO:0016192
Gma18g00242 1700 SUPERFAMILY ARM repeat 457 793 IPR016024 -
Gma18g00242 1700 SUPERFAMILY ARM repeat 901 1066 IPR016024 -
Gma18g00242 1700 SUPERFAMILY ARM repeat 1052 1195 IPR016024 -
Gma18g00242 1700 ProSiteProfiles Clathrin heavy-chain (CHCR) repeat profile. 1437 1580 IPR000547 GO:0006886|GO:0016192
Gma18g00242 1700 Gene3D - 1 377 IPR016025 GO:0005198|GO:0006886|GO:0016192|GO:0030130|GO:0030132
Gma18g00242 1700 PANTHER CLATHRIN HEAVY CHAIN RELATED 1 1698 - -
Gma18g00242 1700 Pfam Region in Clathrin and VPS 1440 1579 IPR000547 GO:0006886|GO:0016192
Gma18g00242 1700 Pfam Region in Clathrin and VPS 1292 1431 IPR000547 GO:0006886|GO:0016192
Gma18g00242 1700 Pfam Region in Clathrin and VPS 850 983 IPR000547 GO:0006886|GO:0016192
Gma18g00242 1700 Pfam Region in Clathrin and VPS 993 1131 IPR000547 GO:0006886|GO:0016192
Gma18g00242 1700 Pfam Region in Clathrin and VPS 701 840 IPR000547 GO:0006886|GO:0016192
Gma18g00242 1700 Pfam Region in Clathrin and VPS 1146 1281 IPR000547 GO:0006886|GO:0016192
Gma18g00242 1700 Pfam Region in Clathrin and VPS 557 690 IPR000547 GO:0006886|GO:0016192
Gma18g00242 1700 Gene3D Tetratricopeptide repeat domain 902 1056 IPR011990 GO:0005515
Gma18g00242 1700 Gene3D Tetratricopeptide repeat domain 1057 1196 IPR011990 GO:0005515
Gma18g00242 1700 Gene3D Tetratricopeptide repeat domain 1197 1536 IPR011990 GO:0005515
Gma18g00242 1700 ProSiteProfiles Clathrin heavy-chain (CHCR) repeat profile. 700 842 IPR000547 GO:0006886|GO:0016192
Gma18g00242 1700 Gene3D - 1542 1638 - -
Gma18g00242 1700 ProSiteProfiles Clathrin heavy-chain (CHCR) repeat profile. 1142 1283 IPR000547 GO:0006886|GO:0016192
Gma18g00242 1700 Coils Coil 1617 1651 - -
Gma18g00242 1700 Pfam Clathrin, heavy-chain linker 344 367 IPR015348 GO:0005198|GO:0006886|GO:0016192|GO:0030130|GO:0030132
Gma18g00242 1700 PIRSF CHC 3 1679 IPR016341 GO:0016192|GO:0032051|GO:0071439
Gma18g00242 1700 ProSiteProfiles Clathrin heavy-chain (CHCR) repeat profile. 993 1138 IPR000547 GO:0006886|GO:0016192
Gma18g00242 1700 SUPERFAMILY Clathrin heavy-chain terminal domain 5 343 IPR016025 GO:0005198|GO:0006886|GO:0016192|GO:0030130|GO:0030132
Gma18g00242 1700 ProSiteProfiles Clathrin heavy-chain (CHCR) repeat profile. 847 986 IPR000547 GO:0006886|GO:0016192
Gma18g00242 1700 Pfam Clathrin propeller repeat 154 197 IPR022365 -
Gma18g00242 1700 Pfam Clathrin propeller repeat 20 56 IPR022365 -
Gma18g00242 1700 SUPERFAMILY ARM repeat 1196 1531 IPR016024 -
Gma18g00242 1700 ProSiteProfiles Clathrin heavy-chain (CHCR) repeat profile. 1288 1434 IPR000547 GO:0006886|GO:0016192
Gma18g00242 1700 SUPERFAMILY ARM repeat 345 500 IPR016024 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Gma18g00242 Gma-Chr18 1959793 1971628 Dispersed/Wgd
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Gma18g00242 K04646 - gmx:547986 3232.58
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Gma18g00242 18 1959793 1971628 Gma11g02334 11 38753773 38769176 ECH
Gma18g00242 18 1959793 1971628 Gma18g00242 18 1959793 1971628 ECH
Gma18g00242 18 1959793 1971628 Gma14g00494 14 4660999 4675344 PCT
Gma18g00242 18 1959793 1971628 Gma02g02433 02 50453060 50466831 PCT
Gma14g00494 14 4660999 4675344 Gma18g00242 18 1959793 1971628 PCT
Gma02g02433 02 50453060 50466831 Gma18g00242 18 1959793 1971628 PCT