Gene search
Sequence information
| Select | Gene | Cds | Cds_length | GC_content | Pep | Pep_length |
|---|---|---|---|---|---|---|
| Gma02g02433 | ATGGCGGCCGCGAATGCTCCGATCACCATGAAAGAAGCCCTAACTTTGCCGAGCATTGGCATCAATTCGCAATTCATCACGTTCACGCACGTGACGATGGAATCGGATAAGTATATATGTGTTCGAGAAACCGCTCCACAGAATAGCGTGGTTATCATTGATATGAACATGCCAAATCAACCTTTGAGGAGGCCTATAACTGCGGATTCTGCTCTTATGAATCCGAATTCTAGAATTCTCGCTTTGAAAGCCCAACTGCAAGGGACTACTCAAGATCACCTACAAATATTTAACATTGAGATGAAAGCAAAGATGAAATCATATCAGATGCCTGAGCAGGTAGTTTTTTGGAAGTGGATTAGCCCCAAAATGTTGGGTCTCGTAACACAGACCTCTGTATACCACTGGTCAATTGAAGGTGACTCTGAACCTGTTAAGATGTTTGAGAGAACAGCAAATTTGGCAAACAACCAGATAATTAATTATCGATGTGACCCTACAGAAAAATGGTTGGTCTTGATTGGTATTGCTCCTGGTTCTCCTGAGAGGCCGCAATTGGTAAAGGGAAACATGCAACTTTTCTCTGTGGATCAACAACGTAGTCAGGCTCTTGAAGCTCATGCCGCATCATTTGCCCAATTTAAAGTTCCTGGGAATGAAAACCCTTCTGTTTTGATTTCTTTTGCCTCAAAGACACTTAATGCTGGCCAAGTTATATCCAAATTGCATGTTATTGAACTCGGTGCACAACCAGGTTTGCATATTTTTAGCTCATTCACAAAGAAACAAGCTGATCTTTTCTTCCCCCCAGATTTTGCTGATGATTTTCCAGTTGCCATGCAGATATCCCACAAATACAATTTGATTTATGTGATTACGAAACTTGGCCTACTATTTGTCTATGATTTGGAGACAGCTACTGCTGTATATAGGAACAGAATCAGTCCAGATCCTATATTTTTGACCTCAGAAGCTACATCTGTGGGAGGCTTTTATGCCATAAACAGGAGAGGCCAGGTTTTATTGGCTACTGTTAATGAACAAACCATTGTGAATTTTGTCAGTGGCCAATTAAACAATTTGGAGCTAGCAGTTAGTCTTGCCAAAAGAGGAAATCTTCCTGGTGCTGAGAAGCTGGTAGTGGAACGTTTTCATGAACTGTTTGCCCAAACAAAATATAAGGAAGCTGCAGAGCTTGCAGCTGAATCTCCACAAGGAATCCTTCGAACTCCTGACACAGTTGCCAAATTTCAGAGTGTTCCTGTGCAAGCTGGGCAAACTCCTCCTTTGTTGCAGTATTTTGGAACACTTTTAACAAGGGGAAAGTTGAATGCCTTTGAATCATTAGAATTGTCACGGTTGGTTGTGAACCAGAACAAGAAAAATCTGTTGGAAAATTGGTTGGCAGAGGACAAGCTTGAATGCAGTGAGGAGCTAGGAGATCTCGTTAAGactgtggacaatgatcttgctttaaaaatatatatcaaagccagagctactccaaaagttgttgctgcatttgctgagaggagggagtttgacaaaattctgatttactctaaacagGTTGGGTACACACCTGACTACCTCTTCCTTCTGCAAACAATTCTCCGGACAGATCCGCAGGGCGCTGTTAATTTTGCATTAATGATGTCTCAAATGGAGGGAGGTAGCCCAGTTGATTACAACACAATAACTGATCTCTTTCTTCAGAGAAATCTGATCCGAGAGGCTACAGCTTTTCTCCTGGATGTTTTAAAGCCAAATCTACCAGAACATGGGTTCCTTCAGACAAAGGTGTTGGAGATAAATCTGGTGACTTTCCCCAATGTTGCTGATGCAATATTGGCTAATGGCATGTTCAGCCATTATGACCGTCCTCGTATTGCCCAGCTTTGCGAAAAAGCGGGCCTTTATGTGCGAGCTTTGCAACATTACACAGAATTACCAGACATCAAACGTGTGATTGTTAATTCACATGCAATTGAACCTCAGtcacttgtagagttttttggtacactgtcaaaagaatgggcattagagtgcatgaaagacttactgctggccaatctcaggggcaacctacagatcattgtgcaggttgctaaagaatattgtgagcaattgggtgttgatgcctgcataaaactttttgagcaatttaggtcatatgaaggactgtactttttccttggatcatacttgagctccagTGAGGATCCTGATATTCACTTTAAGTACATTGAGGCAGCGGCAAAGACTGGTCAAATCAAGGAGGTTGAGCGTGTGACAAGAGAATCAAATTTCTATGATGCTGAGAAAACCAAAAACTTTCTGATGGAGGCTAAGCTTCCAGATGCACGGCCTTTGATTAACGTTTGTGATCGTTTTGGATTTGTTCCAGATCTAACACACTATCTATACACAAACAACATGGTTCGCTACATTGAAGGCTATGTTCAGAAGGTGAACCCAGGGAATGCACCTTTAGTTGTTGGGCAGCTGCTAGATGATGAGTGCGCAGAAGATTTTATCAAAGGCTTGATCCTTTCTGTTCGTTCATTACTACCAGTGGAGCCCCTTGTGGAGGAATGTGAGAAGAGGAATCGGCTTCGTTTGCTCACACAGTTCTTGGAACATCTTGTAAGTGAGGGAAGCCAGGATGTACATGTTCACAATGCACTGGGTAAAATTATCATTGATAGCAACAACAACCCAGAACATTTCCTCACAACCAACCCATACTATGAttctcgagttgtgggcaagtattgtgagaaacgtgatcccaccttagcagttgtagcttatcggcgaggacaatgtgacgatgaacttatcaatgtcaccaacaaaaattctttgttcaaactgcaagcaagatatgttgttgagagaatggatggtgatttgtgggctaaagttcttgatcctgataatgaatatagaaggcaacttattgatcaggttgtatctactgctttgcctgaaagcTCAAGCCCTGAGCAAGTTTCTGCAGCTGTTAAGGCTTTCATGACAGCCGATCTGCCTCATGAATTGATTGAACTTCTTGAGAAGATTGTGCTTCAGAATTCTGCATTCAGTGGAAACTTTAATTTGCAGAATCTTCTTATTTTGACAGCAATAAAGGCTGATCCATCCAGAGTTATGGATTATGTTAATAGATTGGATAATTTTGATGGGCCTGCGGTTGGAGAAATGGCTGTAGAAGCTCAGTTATATGAGGAAGCATTTGCCATTTTTAAGAAGTTCAACTTGAATGTTCAAGCAGTTAATGTGTTGCTTGATAATATTCATAGCATTGATAGAGCTGTTGAGTTTGCTTTCCGAGTTGAAGAAGATGCTGTTTGGAGTCAGGTGGCCAAGGCTCAACTCAGGGATGGGTTAGTAAGTGATGCAATTGAGTCATTTATACGAGCTGATGATGCTACACAATTTTTAGATGTTATCCGTGCTGCTGAAGATGGCAATGTTTACCATGACTTGGTAAAATACTTGCTAATGGTAAGAGGGAAAGCAAAAGAACCCAAGGTCGACAGTGAGCTCATTTATGCATATGCAAAAATTGATAGGCTGAGTGACATTGAGGAGTTCATTCTTATGCCAAATGTTGCTAATCTTCAAAATGTTGGTGACCGGTTGTATGATGAAGCATTATATGAAGCTGCAAAAATCATATTTGCTTTTATATCTAACTGGGCCAAGTTGGCTATCACACTGGTCAAATTACAACAGTTTCAAGGTGCTGTTGATGCAGCAAGGAAAGCTAACAGTTCAAAGACATGGAAGGAAGTTTGCTTTGCTTGTGTTGATGCGGAGGAGTTTCGTTTGGCCCAGATTTGTGGACTCAACATTATTGTTCAGGTGGATGACTTGGAAGAAGTCAGTGAATATTACCAAAATAGAGGTTGCTTCAATGAGCTAATATCTCTGATGGAGAGTGGTTTAGGGTTAGAACGGGCACATATGGGCATCTTTACTGAGTTAGGAGTTCTGTACGCTAGATACCGCCCTGAGAAGCTTATGGAGCATATCAAACTATTCTCAACCCGCCTCAATATTCCTAAACTCATACGAGCTTGTGATGAACAACAGCATTGGAAAGAACTGACCTATTTGTATATACAATATGATGAGTTTGATAATGCTGCAACTACCATCATGAACCATTCACCTGAAGCATGGGATCACATGCAATTCAAAGATGTTGTTGTTAAAGTTGCTAATGTGGAGTTGTATTACAAGGCTGTTCACTTCTACTTGGAAGAGCATCCAGATCTTATCAATGATGTTCTGAACGTCCTTGCACTTCGTGTGGACCATGCACGTGTTGTTGACATCATGCGGAAGGCTGGTCACCTCCGTCTTGTGAAACCATATATGGTTGCAGTTCAAAGCAACAACGTATCTGCTGTTAATGAAGCGTTGAATGAGATATATGTTGAGGAGGAAGATTATGATAGATTGCGCGAGTCAATTGATTTGCACGATAACTTTGATCAAATAGGCCTTGCCCAAAAGATTGAAAAGCATGAGCTTCTTGAGATGAGACGTGTTGCTGCTTATATTTACAAGAAGGCAGGTAGGTGGAAGCAGTCTATTGCTTTGTCAAAGAAGGATAACCTTTACAAAGATGCCATGGAGACAGCCTCACAATCTGGCGAGCGTGAACTTGCTGAGGAGTTGCTTGTTTATTTCATTGATCAGGGAAAGAAGGAATGCTTTGCCTCATGTCTATTTGTTTGCTATGATTTGATACGGGCAGACATTGTTCTTGAACTAGCTTGGATGCACAATATGATTGACTTTGCTTTCCCGTATCTATTGCAGTTTATTCGTGAGTACACTGGCAAAGTCGATGAACTGGTGAAGGACAAAATTGAAGCACAAAATGAAGTGAAGGTTAAAGAGCAAGAGGAAAAGGATGTAGTTGCACAACAGAACATGTATGCTCAATTGTTGCCTCTTGCTTTGCCTGCACCACCAATGCCTGGAATGGGAGGCCCAGGAGGTATGGGAGGAGGCTTTGCTCCTCCCCCTCCAATGGGTGGACTGGGGATGCCCCCAATGCCTCCTTATGGCATGCCTCCCATGGGCAGCAGTTTTTGA | 5133 | 0.3727 | MAAANAPITMKEALTLPSIGINSQFITFTHVTMESDKYICVRETAPQNSVVIIDMNMPNQPLRRPITADSALMNPNSRILALKAQLQGTTQDHLQIFNIEMKAKMKSYQMPEQVVFWKWISPKMLGLVTQTSVYHWSIEGDSEPVKMFERTANLANNQIINYRCDPTEKWLVLIGIAPGSPERPQLVKGNMQLFSVDQQRSQALEAHAASFAQFKVPGNENPSVLISFASKTLNAGQVISKLHVIELGAQPGLHIFSSFTKKQADLFFPPDFADDFPVAMQISHKYNLIYVITKLGLLFVYDLETATAVYRNRISPDPIFLTSEATSVGGFYAINRRGQVLLATVNEQTIVNFVSGQLNNLELAVSLAKRGNLPGAEKLVVERFHELFAQTKYKEAAELAAESPQGILRTPDTVAKFQSVPVQAGQTPPLLQYFGTLLTRGKLNAFESLELSRLVVNQNKKNLLENWLAEDKLECSEELGDLVKTVDNDLALKIYIKARATPKVVAAFAERREFDKILIYSKQVGYTPDYLFLLQTILRTDPQGAVNFALMMSQMEGGSPVDYNTITDLFLQRNLIREATAFLLDVLKPNLPEHGFLQTKVLEINLVTFPNVADAILANGMFSHYDRPRIAQLCEKAGLYVRALQHYTELPDIKRVIVNSHAIEPQSLVEFFGTLSKEWALECMKDLLLANLRGNLQIIVQVAKEYCEQLGVDACIKLFEQFRSYEGLYFFLGSYLSSSEDPDIHFKYIEAAAKTGQIKEVERVTRESNFYDAEKTKNFLMEAKLPDARPLINVCDRFGFVPDLTHYLYTNNMVRYIEGYVQKVNPGNAPLVVGQLLDDECAEDFIKGLILSVRSLLPVEPLVEECEKRNRLRLLTQFLEHLVSEGSQDVHVHNALGKIIIDSNNNPEHFLTTNPYYDSRVVGKYCEKRDPTLAVVAYRRGQCDDELINVTNKNSLFKLQARYVVERMDGDLWAKVLDPDNEYRRQLIDQVVSTALPESSSPEQVSAAVKAFMTADLPHELIELLEKIVLQNSAFSGNFNLQNLLILTAIKADPSRVMDYVNRLDNFDGPAVGEMAVEAQLYEEAFAIFKKFNLNVQAVNVLLDNIHSIDRAVEFAFRVEEDAVWSQVAKAQLRDGLVSDAIESFIRADDATQFLDVIRAAEDGNVYHDLVKYLLMVRGKAKEPKVDSELIYAYAKIDRLSDIEEFILMPNVANLQNVGDRLYDEALYEAAKIIFAFISNWAKLAITLVKLQQFQGAVDAARKANSSKTWKEVCFACVDAEEFRLAQICGLNIIVQVDDLEEVSEYYQNRGCFNELISLMESGLGLERAHMGIFTELGVLYARYRPEKLMEHIKLFSTRLNIPKLIRACDEQQHWKELTYLYIQYDEFDNAATTIMNHSPEAWDHMQFKDVVVKVANVELYYKAVHFYLEEHPDLINDVLNVLALRVDHARVVDIMRKAGHLRLVKPYMVAVQSNNVSAVNEALNEIYVEEEDYDRLRESIDLHDNFDQIGLAQKIEKHELLEMRRVAAYIYKKAGRWKQSIALSKKDNLYKDAMETASQSGERELAEELLVYFIDQGKKECFASCLFVCYDLIRADIVLELAWMHNMIDFAFPYLLQFIREYTGKVDELVKDKIEAQNEVKVKEQEEKDVVAQQNMYAQLLPLALPAPPMPGMGGPGGMGGGFAPPPPMGGLGMPPMPPYGMPPMGSSF | 1710 |
Annotation information
| Select | Seq ID | Length | Analysis | Description | Start | End | IPR | GO |
|---|---|---|---|---|---|---|---|---|
| Gma02g02433 | 1710 | SUPERFAMILY | Clathrin heavy-chain terminal domain | 5 | 346 | IPR016025 | GO:0005198|GO:0006886|GO:0016192|GO:0030130|GO:0030132 | |
| Gma02g02433 | 1710 | ProSiteProfiles | Clathrin heavy-chain (CHCR) repeat profile. | 996 | 1141 | IPR000547 | GO:0006886|GO:0016192 | |
| Gma02g02433 | 1710 | ProSiteProfiles | Clathrin heavy-chain (CHCR) repeat profile. | 1440 | 1583 | IPR000547 | GO:0006886|GO:0016192 | |
| Gma02g02433 | 1710 | Gene3D | Tetratricopeptide repeat domain | 1055 | 1199 | IPR011990 | GO:0005515 | |
| Gma02g02433 | 1710 | Gene3D | Tetratricopeptide repeat domain | 1200 | 1539 | IPR011990 | GO:0005515 | |
| Gma02g02433 | 1710 | SUPERFAMILY | ARM repeat | 460 | 796 | IPR016024 | - | |
| Gma02g02433 | 1710 | ProSiteProfiles | Clathrin heavy-chain (CHCR) repeat profile. | 850 | 989 | IPR000547 | GO:0006886|GO:0016192 | |
| Gma02g02433 | 1710 | Coils | Coil | 1480 | 1500 | - | - | |
| Gma02g02433 | 1710 | Pfam | Clathrin-H-link | 372 | 437 | - | - | |
| Gma02g02433 | 1710 | SUPERFAMILY | ARM repeat | 1199 | 1534 | IPR016024 | - | |
| Gma02g02433 | 1710 | SUPERFAMILY | ARM repeat | 904 | 1070 | IPR016024 | - | |
| Gma02g02433 | 1710 | ProSiteProfiles | Clathrin heavy-chain (CHCR) repeat profile. | 1145 | 1286 | IPR000547 | GO:0006886|GO:0016192 | |
| Gma02g02433 | 1710 | PANTHER | CLATHRIN HEAVY CHAIN | 1 | 1709 | - | - | |
| Gma02g02433 | 1710 | SMART | CLH_2 | 1440 | 1599 | IPR000547 | GO:0006886|GO:0016192 | |
| Gma02g02433 | 1710 | SMART | CLH_2 | 1145 | 1286 | IPR000547 | GO:0006886|GO:0016192 | |
| Gma02g02433 | 1710 | SMART | CLH_2 | 703 | 845 | IPR000547 | GO:0006886|GO:0016192 | |
| Gma02g02433 | 1710 | SMART | CLH_2 | 554 | 696 | IPR000547 | GO:0006886|GO:0016192 | |
| Gma02g02433 | 1710 | SMART | CLH_2 | 1291 | 1437 | IPR000547 | GO:0006886|GO:0016192 | |
| Gma02g02433 | 1710 | SMART | CLH_2 | 850 | 989 | IPR000547 | GO:0006886|GO:0016192 | |
| Gma02g02433 | 1710 | SMART | CLH_2 | 996 | 1141 | IPR000547 | GO:0006886|GO:0016192 | |
| Gma02g02433 | 1710 | Pfam | Clathrin propeller repeat | 154 | 197 | IPR022365 | - | |
| Gma02g02433 | 1710 | Pfam | Clathrin propeller repeat | 20 | 56 | IPR022365 | - | |
| Gma02g02433 | 1710 | ProSiteProfiles | Clathrin heavy-chain (CHCR) repeat profile. | 1291 | 1437 | IPR000547 | GO:0006886|GO:0016192 | |
| Gma02g02433 | 1710 | SUPERFAMILY | ARM repeat | 348 | 503 | IPR016024 | - | |
| Gma02g02433 | 1710 | PIRSF | CHC | 3 | 1688 | IPR016341 | GO:0016192|GO:0032051|GO:0071439 | |
| Gma02g02433 | 1710 | Pfam | Region in Clathrin and VPS | 853 | 986 | IPR000547 | GO:0006886|GO:0016192 | |
| Gma02g02433 | 1710 | Pfam | Region in Clathrin and VPS | 1443 | 1582 | IPR000547 | GO:0006886|GO:0016192 | |
| Gma02g02433 | 1710 | Pfam | Region in Clathrin and VPS | 704 | 843 | IPR000547 | GO:0006886|GO:0016192 | |
| Gma02g02433 | 1710 | Pfam | Region in Clathrin and VPS | 1150 | 1284 | IPR000547 | GO:0006886|GO:0016192 | |
| Gma02g02433 | 1710 | Pfam | Region in Clathrin and VPS | 558 | 693 | IPR000547 | GO:0006886|GO:0016192 | |
| Gma02g02433 | 1710 | Pfam | Region in Clathrin and VPS | 1292 | 1434 | IPR000547 | GO:0006886|GO:0016192 | |
| Gma02g02433 | 1710 | Pfam | Region in Clathrin and VPS | 996 | 1133 | IPR000547 | GO:0006886|GO:0016192 | |
| Gma02g02433 | 1710 | ProSiteProfiles | Clathrin heavy-chain (CHCR) repeat profile. | 554 | 700 | IPR000547 | GO:0006886|GO:0016192 | |
| Gma02g02433 | 1710 | Gene3D | - | 1 | 380 | IPR016025 | GO:0005198|GO:0006886|GO:0016192|GO:0030130|GO:0030132 | |
| Gma02g02433 | 1710 | Pfam | Clathrin, heavy-chain linker | 347 | 370 | IPR015348 | GO:0005198|GO:0006886|GO:0016192|GO:0030130|GO:0030132 | |
| Gma02g02433 | 1710 | Coils | Coil | 1620 | 1647 | - | - | |
| Gma02g02433 | 1710 | Gene3D | - | 1545 | 1641 | - | - | |
| Gma02g02433 | 1710 | PANTHER | CLATHRIN HEAVY CHAIN RELATED | 1 | 1709 | - | - | |
| Gma02g02433 | 1710 | SUPERFAMILY | ARM repeat | 1056 | 1198 | IPR016024 | - | |
| Gma02g02433 | 1710 | ProSiteProfiles | Clathrin heavy-chain (CHCR) repeat profile. | 703 | 845 | IPR000547 | GO:0006886|GO:0016192 |
Duplication type information
| Select | Gene | Chromosome | Start | End | Duplicated_type |
|---|---|---|---|---|---|
| Gma02g02433 | Gma-Chr2 | 50453060 | 50466831 | Wgd |
Pathway information
| Select | Query | KO | Definition | Second KO | KEGG Genes ID | GHOSTX Score |
|---|---|---|---|---|---|---|
| Gma02g02433 | K04646 | - | gmx:100786617 | 3221.02 |
Event-related genes
| Select | Gene_1 | Chr_1 | Start_1 | End_1 | Gene_2 | Chr_2 | Start_2 | End_2 | Event_name |
|---|---|---|---|---|---|---|---|---|---|
| Gma14g00494 | 14 | 4660999 | 4675344 | Gma02g02433 | 02 | 50453060 | 50466831 | GST | |
| Gma18g00242 | 18 | 1959793 | 1971628 | Gma02g02433 | 02 | 50453060 | 50466831 | PCT | |
| Gma02g02433 | 02 | 50453060 | 50466831 | Gma18g00242 | 18 | 1959793 | 1971628 | PCT |