Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Gma18g00117 ATGGGAGGGAAGAGCTCAAAAGGGAGTGGTAGGAGGTATGATTTTGGTGCTTCTTCATCTTCACGGGATAATAACTATGGTGGATACCATCCACAATCACCATACCCTTCTTATCAAACACCTCAGCACCCGCGTGCATCAGCTCCATTTTATGACTATGGACAGCCAAAAAGGAAGTTGGATAAGAAGTATTCCAGGATAGCTGATAATTACCGTTCTTTGGATGAGGTTACAGCTGCACTTGCAAATGCTGGGCTGGAATCTTCTAATCTCATTGTTGGCATTGATTTCACCAAGAGCAATGAGTGGACAGGGAAGAGGTCATTCAATCGAAAAAGTTTACATGACATTAGAAGTGGTCAAAACCCTTATGAACAAGCAATTTCTATTATCGGGAAAACTTTATCTGCTTTCGATGAAGATAACTTGATTCCTTGTTTTGGATTTGGAGATGCATCTACACACGATCAAGATGTATTTAGTTTCTATTCAGAAGAGAGGTTCTGCAATGGGTTTGAGGAAGTTCTGACACGATACAGACAAATTATTCCTTCCCTAAAACTCGCAGGTGTTGCATTGACCTATTATTATCTTAGTAGAAGTTTTTTAATTAGGCTCATTAAAACTTACCGCATTCATGTGACAGGACCCACTTCGTTTGCCCCTATTATTGAAATGGCTATGACTATTGTTGAGCAAAGTGGTGGCCAATATCATGTCTTGCTAATAATTGCAGATGGACAGGTGACTAGAAGCGTTGATACACAAAATGGCAACTTAAGTCCGCAAGAGCAGAACACAATAGATGCAATAGTAAAAGCCAGTGAGTATCCACTGTCAATAGTTTTGGTGGGAGTTGGAGATGGACCATGGGAAATGATGAGGGAATTTGATGATAACATCCCTTCTCGGGCATTTGACAATTTTCAGTTTGTGAATTTTACTGAAATAATGACAAGGAATGTAGATTCAACCAGAAAAGAGACAGATTTTGCCCTTTCAGCTTTGATGGAGATACCTTCTCAATACAAGGCAACCCTAGAGCTTGGCATATTGGGTTCACGGAGGGGGCATTCACCAGATAGGGTTGCTCTACCCCCACCTCTTTATAGTAGAACCTCTTCCAGCATCAGCACAAAATCTACAAGGTCTAACAGTTTTCAGCAGAGGACACCTACACATACTAGCTATGATAGCAGTGTTCACACAGAGACATCATCAAGTTCTTTATATGATAATAAGGTTTGCCCCATTTGTCTTACCAATGCAAAGGATATGGCCTTTGGTTGTGGGCATCAGACTTGTTGCGAGTGTGGAGAGGACCTCCAATTCTGTCCCATTTGCCGGAGCACAATCCATACTAGAATAAGGCTTTACTAG 1380 0.4123 MGGKSSKGSGRRYDFGASSSSRDNNYGGYHPQSPYPSYQTPQHPRASAPFYDYGQPKRKLDKKYSRIADNYRSLDEVTAALANAGLESSNLIVGIDFTKSNEWTGKRSFNRKSLHDIRSGQNPYEQAISIIGKTLSAFDEDNLIPCFGFGDASTHDQDVFSFYSEERFCNGFEEVLTRYRQIIPSLKLAGVALTYYYLSRSFLIRLIKTYRIHVTGPTSFAPIIEMAMTIVEQSGGQYHVLLIIADGQVTRSVDTQNGNLSPQEQNTIDAIVKASEYPLSIVLVGVGDGPWEMMREFDDNIPSRAFDNFQFVNFTEIMTRNVDSTRKETDFALSALMEIPSQYKATLELGILGSRRGHSPDRVALPPPLYSRTSSSISTKSTRSNSFQQRTPTHTSYDSSVHTETSSSSLYDNKVCPICLTNAKDMAFGCGHQTCCECGEDLQFCPICRSTIHTRIRLY 459
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Gma18g00117 459 Gene3D Zinc/RING finger domain, C3HC4 (zinc finger) 393 459 IPR013083 -
Gma18g00117 459 PANTHER RING-FINGER PROTEIN 212 459 - -
Gma18g00117 459 MobiDBLite consensus disorder prediction 369 407 - -
Gma18g00117 459 MobiDBLite consensus disorder prediction 357 407 - -
Gma18g00117 459 Pfam Zinc finger, C3HC4 type (RING finger) 413 453 - -
Gma18g00117 459 Pfam Copine 211 352 IPR010734 -
Gma18g00117 459 Pfam Copine 113 190 IPR010734 -
Gma18g00117 459 SMART VWA_4 88 317 IPR002035 -
Gma18g00117 459 MobiDBLite consensus disorder prediction 12 44 - -
Gma18g00117 459 ProSiteProfiles Zinc finger RING-type profile. 416 449 IPR001841 -
Gma18g00117 459 PANTHER RING-FINGER PROTEIN 1 191 - -
Gma18g00117 459 PANTHER COPINE FAMILY PROTEIN 1 212 459 - -
Gma18g00117 459 PANTHER COPINE FAMILY PROTEIN 1 1 191 - -
Gma18g00117 459 CDD RING-HC_RGLG_plant 415 459 IPR045317 GO:0061630|GO:0070534
Gma18g00117 459 MobiDBLite consensus disorder prediction 1 54 - -
Gma18g00117 459 SUPERFAMILY vWA-like 89 298 IPR036465 -
Gma18g00117 459 SUPERFAMILY RING/U-box 405 455 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Gma18g00117 Gma-Chr18 936606 940474 Dispersed/Wgd
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Gma18g00117 K16280 - gmx:100798816 821.617
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Gma18g00117 18 936606 940474 Gma18g00117 18 936606 940474 ECH
Gma18g00117 18 936606 940474 Gma11g02456 11 39866486 39870402 GST
Gma05g01720 05 38866162 38870253 Gma18g00117 18 936606 940474 PCT
Gma08g01206 08 10262041 10265867 Gma18g00117 18 936606 940474 PCT