Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Gma05g01720 ATGCTTCTAGAGCTAGAGACTTGGACAGCTTTGGTTGTTTTGTTTTTGCTTGTGTTGATTCTAAAGGAGTCGATCATGGGAGGTAAGAGTTCAAAACGGTCTGAAAGAAGGCATGTTTCATCATATGGATCTGCTGGTTCTTCATCTTCACGGGATAGCTATGGATACCCTCAATCACCAAATGCATACCCACAACAAAATCCTTATAATACGCCTCTTCACCACCGTGCACCAGCTCCATTCCACGACTATTCACGGCCAAAAAGGAGGTTAGATAGGAGATATTCAAGAATAGCTGATGATTACCATTCACTGGATGAGGTTACCACTGCTCTTTCACATGCTGGCCTGGAATCTTCTAATCTCATTGTTGGCATTGATTTTACAAAGAGCAACGAGTGGACAGGGAAGAGGTCATTCAACCGAAAAAGTTTACATCATATAGGAAGTGGTCAAAATCCTTATGAACAAGCAATCTCGATTATTGGGAAAACTTTAAGTGTTTTTGACGAGGATAACTTGATTCCTTGTTTTGGATTTGGAGATGCATCAACACATGATCAAGATGTCTTCAGTTTCCATTCAGATGAGAGGTTCTGCCATGGATTTGAGGAAGTTTTGTCAAGATATAGAGATATTGTTCCTCGCCTGCGTCTAGCAGGACCCACTTCATTTGCCCCAATTATTGAGATGGCCATGACTATAGTTGAGCAAAGTGGCGGCCAATATCATGTCCTGCTAATAATTGCTGATGGACAGGTGACCAGAAGTGTTGACACACAACATGGCCAGCTAAGTCCACAGGAAGAGAAGACAATTGATGCAATTGTAAAAGCCAGTGAGTATCCACTTTCAATAGTTTTGGTGGGAGTTGGAGATGGACCATGGGATATGATGAGGGAATTTGATGATAACATCCCAGCTCGAGCATTTGACAATTTTCAGTTTGTGAATTTTACGGAAATAATGTCAGAGAGTATAGACTCAAGCAGAAAAGAGAGAGAGTTTGCACTATCAGCTTTGATGGAGATACCTTCTCAATATAAGGCAACCATAGACCTTGGCATATTGGGTGCACGGAGAGGACATTCAGCAGACAGGGTTCCTCTACCTCCACCTCATTATGAGAGGGCTTCCAGCAGCAGCACAATACCTCTTCCTTCAAACAGTTTTCAGCAGAGCACACCAACATATTATGATAATGTTAACGCAGAATCATCTTCAAGAAACTTATATGATAGTAAGGTTTGCCCGATTTGTCTTACTAATGATAAGGATATGGCATTTGGTTGCGGGCACCAGACTTGCTGTGACTGTGGAGAAAACCTCGAATGCTGCCCCATTTGCCGAAGCACAATCACTACCAGAATAAAGCTTTACTAG 1383 0.4208 MLLELETWTALVVLFLLVLILKESIMGGKSSKRSERRHVSSYGSAGSSSSRDSYGYPQSPNAYPQQNPYNTPLHHRAPAPFHDYSRPKRRLDRRYSRIADDYHSLDEVTTALSHAGLESSNLIVGIDFTKSNEWTGKRSFNRKSLHHIGSGQNPYEQAISIIGKTLSVFDEDNLIPCFGFGDASTHDQDVFSFHSDERFCHGFEEVLSRYRDIVPRLRLAGPTSFAPIIEMAMTIVEQSGGQYHVLLIIADGQVTRSVDTQHGQLSPQEEKTIDAIVKASEYPLSIVLVGVGDGPWDMMREFDDNIPARAFDNFQFVNFTEIMSESIDSSRKEREFALSALMEIPSQYKATIDLGILGARRGHSADRVPLPPPHYERASSSSTIPLPSNSFQQSTPTYYDNVNAESSSRNLYDSKVCPICLTNDKDMAFGCGHQTCCDCGENLECCPICRSTITTRIKLY 460
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Gma05g01720 460 CDD RING-HC_RGLG_plant 416 460 IPR045317 GO:0061630|GO:0070534
Gma05g01720 460 PANTHER RING-FINGER PROTEIN 26 460 - -
Gma05g01720 460 MobiDBLite consensus disorder prediction 40 72 - -
Gma05g01720 460 Pfam Copine 144 357 IPR010734 -
Gma05g01720 460 Gene3D Zinc/RING finger domain, C3HC4 (zinc finger) 394 460 IPR013083 -
Gma05g01720 460 ProSiteProfiles Zinc finger RING-type profile. 417 450 IPR001841 -
Gma05g01720 460 SUPERFAMILY vWA-like 120 303 IPR036465 -
Gma05g01720 460 MobiDBLite consensus disorder prediction 30 85 - -
Gma05g01720 460 PANTHER COPINE FAMILY PROTEIN 1 26 460 - -
Gma05g01720 460 Pfam Zinc finger, C3HC4 type (RING finger) 414 455 - -
Gma05g01720 460 SUPERFAMILY RING/U-box 409 456 - -
Gma05g01720 460 SMART VWA_4 119 322 IPR002035 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Gma05g01720 Gma-Chr5 38866162 38870253 Dispersed/Wgd
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Gma05g01720 K16280 - gmx:100790937 910.983
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Gma05g01720 05 38866162 38870253 Gma08g01206 08 10262041 10265867 GST
Gma05g01720 05 38866162 38870253 Gma18g00117 18 936606 940474 PCT
Gma05g01720 05 38866162 38870253 Gma11g02456 11 39866486 39870402 PCT