Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Gma11g02456 ATGGGAGGGAAGAGCTCAAAAGGGAGTGGTAGGAGGTATGATTTTGGTGCTTCTTCATCTTCAAGGGATAATAGCTATGGTGGATACCCTCCGCAATCACCATACACTTCTTATCAAACACCTCAGCACCCTTGTGCATCAGCATCAGCATCAGCTCCATTTTATGACTATGCACAGCCAAAAAGGAAGTTGGATAAGAAGTATTCCAGAATAGCTGATAATTACCGTTCTTTGGATGAGGTTACTGCTGCACTTGCGAATGCTGGGCTGGAATCTTCTAATCTCATTGTTGGAATTGATTTCACCAAGAGCAATGAGTGGACAGGGAAGAGGTCATTCAATCGAAAAAGTTTACATGACATTAGAAGTGGTCAAAACCCTTATGAACAAGCAATTTCTATTATCGGAAAGACTTTATCTGCTTTCGATGAAGATAACTTGATTCCCTGTTTTGGATTCGGAGATGCGTCTACACATGATCAAGATGTATTCAGTTTCTTTTCAGAAGAGAGGTTCTGCAATGGGTTTGAGGAAGTTCTGACACGATACAGACAAATTATTCCTTCCCTCAAACTCGCAGGACCCACTTCATTTGCCCCTATTATTGAAATGGCTATGACTATTGTTGAGCAAAGTGGTGGCCAATATCATGTCTTGCTAATAATTGCAGATGGACAGGTGACTAGAAGCCTTGACACACAGCATGGCAACTTAAGTCCGCAAGAGCTTAATACAATAAATGCAATAGTAAAAGCCAGTGAGTATCCACTGTCAATAGTTTTGGTGGGAGTTGGAGATGGACCATGGGAAATGATGAGGGAATTTGATGATAACATCCCTTCTCGTGTATTTGACAATTTTCAGTTTGTGAATTTTACTGAAATAATGAGGAGGAATGTAGATCCAGCCAGAAAAGAGACAGATTTTTCACTTTCAGCTTTGATGGAGATACCTTCTCAATACAAGGCAACCCTAGAGCTTGGCATATTGGGTTCACGGAGGGGACATTCACCAGATAGGGTTGCTCTACCCCCACCTCTTTATAGTAGAACCTCTTCCAGCATCAGCACAAAATCTACAAGGTCAAACAGTTTTCAGCAGAGGACACCTACACATACTAGCTATGATAGCGGTGTTCACACAGAGACATCATCAAGTTCTTTATACGATAATAAGGTTTGCCCCATTTGTCTTACCAATGCAAAGGATATGGCCTTTGGTTGTGGGCATCAGACTTGTTGCGAGTGTGGAGAAGACCTCCAATTCTGTCCCATTTGCCGGAGCACAATCCATACTAGAATAAGGCTTTACTAG 1314 0.4186 MGGKSSKGSGRRYDFGASSSSRDNSYGGYPPQSPYTSYQTPQHPCASASASAPFYDYAQPKRKLDKKYSRIADNYRSLDEVTAALANAGLESSNLIVGIDFTKSNEWTGKRSFNRKSLHDIRSGQNPYEQAISIIGKTLSAFDEDNLIPCFGFGDASTHDQDVFSFFSEERFCNGFEEVLTRYRQIIPSLKLAGPTSFAPIIEMAMTIVEQSGGQYHVLLIIADGQVTRSLDTQHGNLSPQELNTINAIVKASEYPLSIVLVGVGDGPWEMMREFDDNIPSRVFDNFQFVNFTEIMRRNVDPARKETDFSLSALMEIPSQYKATLELGILGSRRGHSPDRVALPPPLYSRTSSSISTKSTRSNSFQQRTPTHTSYDSGVHTETSSSSLYDNKVCPICLTNAKDMAFGCGHQTCCECGEDLQFCPICRSTIHTRIRLY 437
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Gma11g02456 437 SMART VWA_4 92 295 IPR002035 -
Gma11g02456 437 MobiDBLite consensus disorder prediction 336 386 - -
Gma11g02456 437 CDD RING-HC_RGLG_plant 393 437 IPR045317 GO:0061630|GO:0070534
Gma11g02456 437 Pfam Copine 117 330 IPR010734 -
Gma11g02456 437 MobiDBLite consensus disorder prediction 347 386 - -
Gma11g02456 437 SUPERFAMILY vWA-like 93 276 IPR036465 -
Gma11g02456 437 MobiDBLite consensus disorder prediction 12 44 - -
Gma11g02456 437 PANTHER COPINE FAMILY PROTEIN 1 1 437 - -
Gma11g02456 437 SUPERFAMILY RING/U-box 383 433 - -
Gma11g02456 437 PANTHER RING-FINGER PROTEIN 1 437 - -
Gma11g02456 437 Gene3D Zinc/RING finger domain, C3HC4 (zinc finger) 371 437 IPR013083 -
Gma11g02456 437 MobiDBLite consensus disorder prediction 1 44 - -
Gma11g02456 437 ProSiteProfiles Zinc finger RING-type profile. 394 427 IPR001841 -
Gma11g02456 437 Pfam Zinc finger, C3HC4 type (RING finger) 391 431 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Gma11g02456 Gma-Chr11 39866486 39870402 Dispersed/Wgd
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Gma11g02456 K16280 - gmx:100820356 874.004
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Gma18g00117 18 936606 940474 Gma11g02456 11 39866486 39870402 GST
Gma05g01720 05 38866162 38870253 Gma11g02456 11 39866486 39870402 PCT
Gma08g01206 08 10262041 10265867 Gma11g02456 11 39866486 39870402 PCT